View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_28 (Length: 435)
Name: NF4402_low_28
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 9237952 - 9237548
Alignment:
| Q |
13 |
aagaatattgctgatttctctattgaaagtttcatcgaaatttgtttagatttgaagtgcaaaaagttgcagggtttctaccttgaaattttgttggatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237952 |
aagaatattgctgatttctctattgaaagtttcatcgaaatttgtttagatttgaagtgcaaaaagttgcagggtttctaccttgaaattttgttggatt |
9237853 |
T |
|
| Q |
113 |
tttgtgaattgcttagaggggtagggtttacgtgtgatgagcctttgtatgtttcttgtcgggatggttttggaaatttgttgacactcgttggtggtgt |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237852 |
tttgtgaattgcttagaggggtaggttttacgtgtgatgagcctttgtatgtttcttgtcgggatggttttggaaatttgttgacactcgttggtggtgt |
9237753 |
T |
|
| Q |
213 |
ccccattaacaatcctaatataaaggttttgctttggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatg |
312 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9237752 |
ccccattaacaatcctaatatgaaggttttgcttcggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttggatttgagtatg |
9237653 |
T |
|
| Q |
313 |
aattgggacactgccaaggggatttcgtacaaagttgttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacat |
412 |
Q |
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| T |
9237652 |
aattgggacactgccaaggggatttcgtacaaagttgttttggattttgttaaattctgtggccctttgaggatgggatttgccgaggagcaagcaacat |
9237553 |
T |
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| Q |
413 |
ccgat |
417 |
Q |
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||||| |
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| T |
9237552 |
ccgat |
9237548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 53 - 413
Target Start/End: Complemental strand, 9250436 - 9250076
Alignment:
| Q |
53 |
tttgtttagatttgaagtgcaaaaagttgcagggtttctaccttgaaattttgttggatttttgtgaattgcttagaggggtagggtttacgtgtgatga |
152 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||| ||| | |||||||| |||||||||||||||||||||||||||| || ||||||| | |
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| T |
9250436 |
tttgtttagatttgaagtgcaaaacgttgcagagtgcttacctagaagtgttgttggagttttgtgaattgcttagaggggtagggtgtaagtgtgatca |
9250337 |
T |
|
| Q |
153 |
gcctttgtatgtttcttgtcgggatggttttggaaatttgttgacactcgttggtggtgtccccattaacaatcctaatataaaggttttgctttggggt |
252 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||| || ||||| ||||| | ||| || |||||||| || |||||||||||| ||||| |
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| T |
9250336 |
tcctttgtatgtttgttgtcgggatggttttgtggaattgttgattcttgttggcggtgttctcatcaagaatcctaaaatgaaggttttgcttcggggt |
9250237 |
T |
|
| Q |
253 |
gttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggacactgccaaggggatttcgtacaaagttgttt |
352 |
Q |
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||| |||||||||||| |||||| |||| ||| |||||| || ||||| |||||||||||||| |||| | |||| |||||||||||||||||| |
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| T |
9250236 |
gtttttgactgtgttcgagagatcacagatgagctgttgaggtttttggatttgagtatgaattttcccactaaaagggggctttcgtacaaagttgttt |
9250137 |
T |
|
| Q |
353 |
tggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatc |
413 |
Q |
| |
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| T |
9250136 |
ttgattttgttaaattctgttgccctttgaggatgggattcgccaaggagcaagcaacatc |
9250076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 51 - 417
Target Start/End: Complemental strand, 9258509 - 9258143
Alignment:
| Q |
51 |
aatttgtttagatttgaagtgcaaaaagttgcagggtttctaccttgaaattttgttggatttttgtgaattgcttagaggggtagggtttacgtgtgat |
150 |
Q |
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||||||||||||||||||| |||||||||||||||| | ||||||||| | | ||||| |||||||||||||||||| ||| | ||| || || |||| |
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| T |
9258509 |
aatttgtttagatttgaaggacaaaaagttgcagggtgtttaccttgaagtgtcattggagttttgtgaattgcttagaagggcacggtgtaagtatgat |
9258410 |
T |
|
| Q |
151 |
gagcctttgtatgtttcttgtcgggatggttttggaaatttgttgacactcgttggtggtgtccccattaacaatcctaatataaaggttttgctttggg |
250 |
Q |
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|| ||| ||||||||| ||| |||||| ||||| | ||||||||| || |||||| |||| | || | |||||||| | |||| ||||| ||| |
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| T |
9258409 |
gatcctctgtatgttttttgccgggatagtttttcatctttgttgacgcttgttggtcgtgttaactttcagaatcctaaaggagaggtcatgcttcggg |
9258310 |
T |
|
| Q |
251 |
gtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggacactgccaaggggatttcgtacaaagttgt |
350 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||| || ||||| | |||||||||| || ||| | ||||| |||||| ||| |||| |
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| T |
9258309 |
gtgtttttgactgtgttcacgagatcgcagatgagttgttgaggtttttggatctgagtatgaactgtcccacgggtgaggggttttcgttcaactttgt |
9258210 |
T |
|
| Q |
351 |
tttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatccgat |
417 |
Q |
| |
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|||||||||||||||||| | ||||| ||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
9258209 |
tttggattttgttaaattctctggccatttaaggatgggattggccgagcagcaagcaacatccgat |
9258143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 50 - 417
Target Start/End: Complemental strand, 9268518 - 9268151
Alignment:
| Q |
50 |
aaatttgtttagatttgaagtgcaaaaagttgcagggtttctaccttgaaattttgttggatttttgtgaattgcttagaggggtagggtttacgtgtga |
149 |
Q |
| |
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||||||| ||| ||| |||| |||||||||||||||| | ||||||||| | || ||||| |||||||||||||||||| || ||||| || || || |
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| T |
9268518 |
aaatttgcttaaattcgaaggacaaaaagttgcagggtgtttaccttgaagtgttattggagttttgtgaattgcttagaaggacagggtgtaagtccga |
9268419 |
T |
|
| Q |
150 |
tgagcctttgtatgtttcttgtcgggatggttttggaaatttgttgacactcgttggtggtgtccccattaacaatcctaatataaaggttttgctttgg |
249 |
Q |
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||| | | ||||||||| ||| |||||| |||||| | ||||||||| || ||||||||||| | || | |||||||| ||||||| ||||| || |
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| T |
9268418 |
tgatcgtctgtatgttttttgccgggatagttttgcatctttgttgacgcttgttggtggtgttagctttcataatcctaaaggaaaggttatgcttcgg |
9268319 |
T |
|
| Q |
250 |
ggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggacactgccaaggggatttcgtacaaagttg |
349 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||||| || ||||| |||||||||||| || ||| | ||||| |||||| ||| |||| |
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| T |
9268318 |
ggtgtttttgactgtgttcacgagatcgcatataagttgttgaggtttttggatttgagtatgaactgtcccacgggtgaggggctttcgttcaaggttg |
9268219 |
T |
|
| Q |
350 |
ttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatccgat |
417 |
Q |
| |
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||||||||||||||||||| | | || ||||||||||||||| ||| | | ||||||||||||||| |
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| T |
9268218 |
ttttggattttgttaaattctccgaccatttgaggatgggattggccatgcatcaagcaacatccgat |
9268151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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