View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_low_3 (Length: 1089)
Name: NF4402_low_3
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 439 - 1077
Target Start/End: Original strand, 14433119 - 14433757
Alignment:
| Q |
439 |
tttgtcactcttaatctaacggtgtacaattaatttacgaactcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattaca |
538 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433119 |
tttgtcactcttaatctaacggtgtacaattaatttacgaactcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattaca |
14433218 |
T |
|
| Q |
539 |
tcatggtcagcctcataagtaataggagtgtattgtggccaataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacac |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433219 |
tcatggtcagcctcataagtaataggagtgtattgtggccaataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacac |
14433318 |
T |
|
| Q |
639 |
gaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatttttatcatacacagcaacatcaccaccccattgaaacatccttga |
738 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14433319 |
gaagggttccatcagggttgtttggggaagtcaccacctctatgtaagattcatttttatcatacacagcagcatcaccaccccattgaaacatccttga |
14433418 |
T |
|
| Q |
739 |
atgcaatatattaattgcatttttgtattcctacaaaataaaattaaacacattgttagttaaccttccttgcatggtcggcccaataaattttatttgt |
838 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14433419 |
atgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgcattgttagttaaccttccttgcatggtcggcccagtaaattttatttgt |
14433518 |
T |
|
| Q |
839 |
agatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagt |
938 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14433519 |
aggtgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagt |
14433618 |
T |
|
| Q |
939 |
aggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttgagaagagccatttccaacaactatg |
1038 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14433619 |
aggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttgagaagagccatttccaacaactatg |
14433718 |
T |
|
| Q |
1039 |
tatttatctttggtcacagcatttccaactaaatgatga |
1077 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14433719 |
tatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 14432694 - 14433086
Alignment:
| Q |
16 |
aaaacaacactctaagttacataaagccaattaaagagatgaaagggtcgaannnnnnnncaagaaatgggnnnnnnnn--gtactagggtatgtttcag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
14432694 |
aaaaccacactctaagttacataaagccaattaaagagatgaaagggtcgaattttttttcaagaaatgggaaaaaaaaaagtactagggtatgtttcag |
14432793 |
T |
|
| Q |
114 |
atatctcattggtgaagttacagtacgcccttggatacttggttacagtgaagaccttgctttgttcaacagctcctctaaaattctcccatctttctct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14432794 |
atatctcattggtgaagttacagtacgcccttggatacttggttacagtgaagaccttgctttgttcaacagctcctctaaaattctcccatctttctct |
14432893 |
T |
|
| Q |
214 |
catgagacgtttgctatattcaaagaagagttcagattcaattgacttgaaattttggtaaccatcacaaatcactccaatgatcttagctgctcttgtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14432894 |
catgagacgtttgctatattcaaagaagagttcagattcaattgacttgaaattttggtaaccatcacaaatcactccaatgatcttagctgctcttgtt |
14432993 |
T |
|
| Q |
314 |
tgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccatcttcttagcaacttcaatgtccttcacaatagcccagcttaac |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14432994 |
tgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccatcttcttagcaacttcaatgtccttcacaatagcccagcttaac |
14433086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 479 - 780
Target Start/End: Original strand, 14441490 - 14441791
Alignment:
| Q |
479 |
actcaccctatacgggaaccagcatgaccagtgcatttggagaatgtgaagagcattacatcatggtcagcctcataagtaataggagtgtattgtggcc |
578 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||||||| || ||||||||| | ||||| || | | || | |||||| |||||||||||||||| |
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|
| T |
14441490 |
actcacccgatacgggaaccaccatgaccggtgcatttggataacgtgaagagcgtaacatcttgattaatctggtgagtaattggagtgtattgtggcc |
14441589 |
T |
|
| Q |
579 |
aataataggccaagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctc |
678 |
Q |
| |
|
| ||||||||||| |||| ||| | |||||||| | || | ||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| |
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|
| T |
14441590 |
agtaataggccaaatcataaattagtttcccttcaacttccgagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctc |
14441689 |
T |
|
| Q |
679 |
tatgtaagattcatttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatat-attaattgcatttttgtattcctacaaaat |
777 |
Q |
| |
|
|||||||| || |||| |||||||| |||| ||||||||||||||||||| | |||||| |||| ||| || ||| ||| || ||||||||||||||| |
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| T |
14441690 |
tatgtaaggtttgttttcatcatacaaagcagcatcaccaccccattgaaatagccttgattgca-tatgatcaatcacatcttggtattcctacaaaat |
14441788 |
T |
|
| Q |
778 |
aaa |
780 |
Q |
| |
|
||| |
|
|
| T |
14441789 |
aaa |
14441791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 167 - 392
Target Start/End: Original strand, 14440934 - 14441162
Alignment:
| Q |
167 |
accttgctttgttcaacagctcctctaaaattctcccatctttctctcatgagacgtttgctatattcaaagaagagtt---cagattcaattgacttga |
263 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||||| |||||| ||||||| |||| |||| | ||| ||||| | ||||| ||| ||||||| |
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|
| T |
14440934 |
accttgcttttctcaatagctcccttaaatttctcccacctttctatcatgagttttttggtataattaaaaaagaggtgatcagatccaacggacttga |
14441033 |
T |
|
| Q |
264 |
aattttggtaaccatcacaaatcactccaatgatcttagctgctcttgtttgggattcttttgatacgcccattgagcttgattgcacaaatgtcaccat |
363 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| || || || || ||| |||| ||| ||| ||| |
|
|
| T |
14441034 |
aattttcgtaaccatcacaaatcacttcaatgatcttagcagctcgaatttgggattcttttgacaccccaatggaacttaggtgcatgaatctcatcat |
14441133 |
T |
|
| Q |
364 |
cttcttagcaacttcaatgtccttcacaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14441134 |
cttcttagcaacttcaatgtccttcacaa |
14441162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 914 - 1067
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
914 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
1013 |
Q |
| |
|
||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
|
|
| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
|
| Q |
1014 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
1067 |
Q |
| |
|
|| |||||||||||| | |||||| | |||||||| || ||| |||| ||||| |
|
|
| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 821 - 909
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
821 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
909 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||||||||||| |||| || || |||||||||||| |
|
|
| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 867
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
817 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
867 |
Q |
| |
|
||||||||||||||||||| ||| ||| | ||||||||| ||||||||||| |
|
|
| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 865
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
816 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
865 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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