View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_30 (Length: 419)
Name: NF4402_low_30
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 32377568 - 32377180
Alignment:
| Q |
20 |
tgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggaga |
119 |
Q |
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| T |
32377568 |
tgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggaga |
32377469 |
T |
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| Q |
120 |
ccaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377468 |
tcaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatg |
32377369 |
T |
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| Q |
220 |
ttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377368 |
ttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaat |
32377269 |
T |
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| Q |
320 |
tgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
408 |
Q |
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| T |
32377268 |
tgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
32377180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 32365883 - 32365495
Alignment:
| Q |
20 |
tgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggaga |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32365883 |
tgaaataaataaccaaatactaaatgctctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatcttgttcttttgtgtagatggaca |
32365784 |
T |
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| Q |
120 |
ccaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatg |
219 |
Q |
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||||||||| || || ||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365783 |
ccaaatgatgtttctgcacttaggatgatttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatg |
32365684 |
T |
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| Q |
220 |
ttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaat |
319 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| ||||||| |
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| T |
32365683 |
ttaactgttttgctcaatatgcactttgtagtctaaatttaggatataaaagatctgagagaccagccattggagttggaattactatatccattgcaat |
32365584 |
T |
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| Q |
320 |
tgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
408 |
Q |
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||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365583 |
tgcagcaccggcaatagctggattgtacactattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
32365495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 36122512 - 36122254
Alignment:
| Q |
33 |
caaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggagaccaaatgatatta |
132 |
Q |
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|||||||| |||||||| |||||||| |||| |||||| || ||||| ||| ||| |||| ||||| ||| |||| |||||| |||| ||||| |
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| T |
36122512 |
caaatactcaatgctctgtttacactgatgtgtttgtacaagcatccgaagttattctaccaccttgtacttctgtgccgatggaattcaaaagatatcg |
36122413 |
T |
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| Q |
133 |
ctacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgc |
232 |
Q |
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| | |||||||| | | |||||| ||||| |||| |||||||| ||||||| ||| || |||||||| || |||||| |||||| |||||||| || |
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| T |
36122412 |
ccaaacttagaaaggagtactgcaagaatggaacttataagcctcatgaatggaaacacataatggtagtggtaattctcggtcatgtgaactgtttcgc |
36122313 |
T |
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| Q |
233 |
tcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattg |
291 |
Q |
| |
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||| |||||| |||| ||||||| ||||| ||||||||||||||| | || ||||||| |
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| T |
36122312 |
tcagtatgcactttgcggtctaaacttaggttataaaagatctgagcgcccggccattg |
36122254 |
T |
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