View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_31 (Length: 419)

Name: NF4402_low_31
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_31
NF4402_low_31
[»] chr7 (10 HSPs)
chr7 (40-417)||(44754919-44755296)
chr7 (40-214)||(8900713-8900887)
chr7 (227-353)||(34891568-34891694)
chr7 (51-133)||(23944095-23944177)
chr7 (88-226)||(31152782-31152920)
chr7 (227-278)||(32138875-32138926)
chr7 (256-354)||(31152615-31152713)
chr7 (256-354)||(31171177-31171275)
chr7 (41-205)||(31171364-31171529)
chr7 (52-96)||(7463868-7463912)
[»] chr4 (5 HSPs)
chr4 (43-355)||(25062330-25062653)
chr4 (226-307)||(46431110-46431191)
chr4 (227-314)||(20512780-20512867)
chr4 (43-108)||(7436968-7437033)
chr4 (237-345)||(20512591-20512698)
[»] chr2 (6 HSPs)
chr2 (40-354)||(28282658-28282986)
chr2 (44-333)||(25606378-25606659)
chr2 (40-186)||(16576256-16576401)
chr2 (227-330)||(2909857-2909959)
chr2 (232-330)||(34176915-34177013)
chr2 (227-327)||(16576452-16576552)
[»] chr1 (6 HSPs)
chr1 (42-133)||(10775027-10775118)
chr1 (43-101)||(7997195-7997253)
chr1 (227-281)||(10775198-10775252)
chr1 (253-327)||(34601550-34601624)
chr1 (233-317)||(67967-68051)
chr1 (42-134)||(52432671-52432763)
[»] scaffold0178 (1 HSPs)
scaffold0178 (96-192)||(16766-16862)
[»] chr8 (5 HSPs)
chr8 (227-273)||(32166629-32166675)
chr8 (60-187)||(29969125-29969253)
chr8 (49-133)||(37010319-37010403)
chr8 (227-336)||(37010276-37010385)
chr8 (40-114)||(42054597-42054671)
[»] scaffold0136 (1 HSPs)
scaffold0136 (92-173)||(36907-36988)
[»] chr5 (7 HSPs)
chr5 (227-300)||(973146-973219)
chr5 (49-134)||(2243289-2243374)
chr5 (89-184)||(17739923-17740018)
chr5 (227-278)||(2243305-2243356)
chr5 (40-81)||(7215322-7215363)
chr5 (233-330)||(22780281-22780378)
chr5 (227-330)||(41264408-41264512)
[»] chr6 (2 HSPs)
chr6 (166-226)||(32342564-32342624)
chr6 (286-330)||(7556052-7556096)
[»] chr3 (2 HSPs)
chr3 (230-353)||(39341237-39341360)
chr3 (50-124)||(20519279-20519353)
[»] scaffold0564 (1 HSPs)
scaffold0564 (286-359)||(5370-5444)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 40 - 417
Target Start/End: Original strand, 44754919 - 44755296
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggct 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44754919 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttgatccataatcgaattcggct 44755018  T
Q  140 tattattagggataaattgcctcgaattcatcaagggataatgtaggtttcactattttggttttttcctacaatcaaatatcatttaacatcaaacttc 239  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44755019 tattattaggggtaaattgcctcgaattcatcaagggataatgtaggtttcactattttggttttttcttacaatcaaatatcatttaacatcaaacttc 44755118  T
Q  240 ttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaaagggtg 339  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44755119 ttcatatcatttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaaagggtg 44755218  T
Q  340 acgtagacctcaccaaaatgacccaatttgatcattcataatattttagcggttcaattcaatccctctagtataata 417  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  44755219 acgtaaacctcaccaaaatgacccaatttgatcattcataatatttcagcggttcaattcaatccctctaatataata 44755296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 8900887 - 8900713
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctccttt-gatccataatcgaattcggc 138  Q
    |||||||||||| |||||||| |||||||||| ||| |||||| | | | | || ||||||| ||||| ||| |  ||| | | |||||||||||||  |    
T  8900887 acaatcaaatactattttcatctctagaacattaaatttcttcatctgtcttatacaacatgtgatctacatttttttttgtttcataatcgaattctac 8900788  T
Q  139 ttattattagggataaattgcctcgaattcatcaagggataatgtaggtttcactattttggttttttcctacaat 214  Q
    || |||||||||||||||| || | |||||||||| |||||||||||| ||||  ||||| |||||||| ||||||    
T  8900787 ttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaacatttttgttttttcttacaat 8900713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 353
Target Start/End: Original strand, 34891568 - 34891694
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaat 326  Q
    ||||||||| |||||||| | |||  |||||||||| |||| ||| | |||| ||| ||||| ||||| |||||||||||     |||||| ||||||||    
T  34891568 aacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatcttatttgttattgatagtaaattacccctaat 34891667  T
Q  327 tcatgaaagggtgacgtagacctcacc 353  Q
    |||| ||||||| || |||||||||||    
T  34891668 tcattaaagggtaacatagacctcacc 34891694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 23944095 - 23944177
Alignment:
Q  51 ccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaat 133  Q
    |||||||||| |  |||||||||||||||||| | | |||||||||||||| ||| | ||||||||||  |||| ||||||||    
T  23944095 ccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaat 23944177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 31152920 - 31152782
Alignment:
Q  88 tttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggcttattattagggataaattgcctcgaattcatcaagggataatgtaggt 187  Q
    |||||||||| ||| ||||| |||||| || | | ||||||||||| |  ||| ||||||  | |||||| || | ||||||||||| ||||||||||      
T  31152920 tttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  188 ttcactattttggttttttcctacaatcaaatatcattt 226  Q
    ||||  |||||||||||||| ||||| ||| || |||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattt 31152782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 32138926 - 32138875
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttc 278  Q
    ||||||||| |||||||| | ||| |||||||||||||||| ||||||||||    
T  32138926 aacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttc 32138875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 31152713 - 31152615
Alignment:
Q  256 aacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaaagggtgacgtagacctcacca 354  Q
    ||||| |||| |||||||||||||||    |||| ||| | | |||| ||||||||| |||| |||| |||||||||| |||| |||||| ||||||||    
T  31152713 aacatctaatgttcatcttcttcattctgtaatcaaattagacttgtcattagggatcaattacccccaattcatgaaggggtaacgtaggcctcacca 31152615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 31171275 - 31171177
Alignment:
Q  256 aacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaaagggtgacgtagacctcacca 354  Q
    ||||| |||| |||||||||||||||  | |||| ||| | | |||| ||||||||| |||| |||| |||||||||| || | |||||| ||||||||    
T  31171275 aacatctaattttcatcttcttcattctataatcaaattagacttgtcattagggatcaattacccccaattcatgaagggataacgtaggcctcacca 31171177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 31171529 - 31171364
Alignment:
Q  41 caatcaaataccattttcatttctagaa-catcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggct 139  Q
    |||| ||||||||||||||| | ||||| | |||| ||||| | | | |||||||||| ||| ||| | |||||| || | | ||||||||||| |  ||    
T  31171529 caattaaataccattttcatctttagaaacttcaatcttctacatctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaatcctact 31171430  T
Q  140 tattattagggataaattgcctcgaattcatcaagggataatgtaggtttcactattttggttttt 205  Q
    | ||||||  | |||||| || | ||||||||||| ||||||||||  ||||  ||||||||||||    
T  31171429 tgttattataggtaaattacccccaattcatcaagtgataatgtagacttcatcattttggttttt 31171364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 7463868 - 7463912
Alignment:
Q  52 cattttcatttctagaacatcaaacttcttcctttatttcattca 96  Q
    |||||||||||  |||||||||||||||||| | |||||||||||    
T  7463868 cattttcatttgaagaacatcaaacttcttcatctatttcattca 7463912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 355
Target Start/End: Original strand, 25062330 - 25062653
Alignment:
Q  43 atcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggcttat 142  Q
    ||||||||| ||||| || |  |||||||||||||||||| | |  |||||| |||||| ||||||||||||||||| ||||||||| ||| |  ||| |    
T  25062330 atcaaatactatttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgt 25062429  T
Q  143 tattagggataaattgcctcgaattcatcaagggataatgtaggtttcactattttgg-ttttttcctacaatcaaatatcattt----------aacat 231  Q
    |||||||| |||||| ||   |||||||||||| |||||||||| ||||| | ||||| ||||||| ||||||||| || | |||          || ||    
T  25062430 tattaggggtaaattaccctcaattcatcaaggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatat 25062529  T
Q  232 caaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatg 331  Q
    ||||||||||||| ||||| ||||||| |||||||||  ||||||||| |  | ||| |||||||| |||| || ||   |||||| |  | ||||||||    
T  25062530 caaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcatacttgtcatgagttgtaaattacttccaattcatg 25062629  T
Q  332 aaagggtgacgtagacctcaccaa 355  Q
    || ||||||||||  |||||||||    
T  25062630 aaggggtgacgtaagcctcaccaa 25062653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 46431191 - 46431110
Alignment:
Q  226 taacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttatta 307  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||| || || |||| |||| || |||| ||||    
T  46431191 taacatcaaacttcttcatcttcttagttcaacacgtaatcttcatcttcttctttcaagaatcaaatcttacttgtcatta 46431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 20512867 - 20512780
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataa 314  Q
    |||||||||||||||||| |||||  || |||||||||||| ||| | |||| ||  | ||||||||||||||||||| || ||||||    
T  20512867 aacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatcatatttgttagtaaggataa 20512780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 7437033 - 7436968
Alignment:
Q  43 atcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatctt 108  Q
    ||||||||| ||||| || | ||||||||||| |||| || | | |||||||||||||||||||||    
T  7437033 atcaaatacaatttttatctatagaacatcaagcttcgtcgtctgtttcattcaacatgcgatctt 7436968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 20512698 - 20512591
Alignment:
Q  237 ttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaaagg 336  Q
    ||||||||||||||  || ||||||| ||||| |||||||| |||  | ||| ||||||||||| |  |||  |||||||| || | |||||||||||||    
T  20512698 ttcttcatattcttcattgaacatgtgatctt-atcttctttatttcagaattgaatcatatttatcgttaaagataaattacctccaattcatgaaagg 20512600  T
Q  337 gtgacgtag 345  Q
    || ||||||    
T  20512599 gtaacgtag 20512591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 354
Target Start/End: Original strand, 28282658 - 28282986
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggct 139  Q
    |||||| |||||||||||||| || | |||||||||||||||  | |  ||||||||| ||| ||||| |||||| || | ||||||||| ||||   ||    
T  28282658 acaatcgaataccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttact 28282757  T
Q  140 tattattagggataaattgcctcgaattcatcaaggga----taatgtaggtttcactattttggttttttcctacaatcaaatatcatt---------- 225  Q
    | ||||||||| |||||| ||   |||||||||| | |    ||||||||| ||||| |||||| ||||||| ||||||||| |||||||              
T  28282758 tgttattaggggtaaattaccgtcaattcatcaatgaataattaatgtaggcttcaccattttgattttttcttacaatcaattatcattttcatctcca 28282857  T
Q  226 taacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaa 325  Q
    ||| ||||||||| ||||| | ||| | |||||||||||||||||| ||||||| |  |  ||||||||||| ||   || || | |||||| |||||||    
T  28282858 taatatcaaactttttcatttgcttcgctcaacatgtaatcttcattttcttcaatccagtatcgaatcatacttaacatgagtggtaaattacccctaa 28282957  T
Q  326 ttcatgaaagggtgacgtagacctcacca 354  Q
    |||||| |||||| ||||||  |||||||    
T  28282958 ttcatgcaagggtaacgtaggtctcacca 28282986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 333
Target Start/End: Original strand, 25606378 - 25606659
Alignment:
Q  44 tcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggcttatt 143  Q
    ||||||| ||||||||  || ||||||||||| |||||| | | |||||||||||||  ||| | ||||||||| | ||||||| ||||| |  ||| ||    
T  25606378 tcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgttccataaacgaatcctacttgtt 25606477  T
Q  144 attagggataaattgcctcgaattcatcaagggataatgtaggtttcactattttggttttttcctacaatcaaatatcatttaacatcaaacttcttca 243  Q
    |||| || |||||| ||   |||||||||   ||||| |||| |||||| ||||| || ||||| ||||||||| || |||||        |||||||||    
T  25606478 attaagggtaaattaccctcaattcatcagaagataacgtagatttcaccattttagtcttttcttacaatcaattagcattt-------tacttcttca 25606570  T
Q  244 tattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcatgaa 333  Q
    | |  || |||||||||||||||||||||||||||| |  | ||| ||||||||  | | |||||||||||||| ||||| |||||||||    
T  25606571 tctctttcgttcaacatgtaatcttcatcttcttcaatttagaattgaatcatacctatcattagggataaattacccct-attcatgaa 25606659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 16576256 - 16576401
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggct 139  Q
    |||||||| |||||||||| | || |||||||||||||||||| | |  ||||||||||||| ||||| | |||| || | |||| ||||||||    ||    
T  16576256 acaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatact 16576355  T
Q  140 tattattagggataaattgcctcgaattcatcaagggataatgtagg 186  Q
    ||| ||||||| ||||||  | | ||||||||||||| ||| |||||    
T  16576356 tatcattaggggtaaattaac-ccaattcatcaaggggtaacgtagg 16576401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 2909857 - 2909959
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaat 326  Q
    |||||||||||||||||| | |||  ||||||||||||||| ||| | |||||||  ||||| ||||| ||||| | |||| |||||| |  ||||||||    
T  2909857 aacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttatttatcatta-ggataactgacccctaat 2909955  T
Q  327 tcat 330  Q
    ||||    
T  2909956 tcat 2909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 34176915 - 34177013
Alignment:
Q  232 caaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcat 330  Q
    ||||||| | ||| |||||  |||||||||| || |||||| ||||||||  | ||| ||||| |||||||||||| || |||||| || |||||||||    
T  34176915 caaacttgtacatcttcttcattcaacatgtgatattcatcctcttcatttcagaattgaatcttatttgttattaagggtaaattacctctaattcat 34177013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 16576452 - 16576552
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaat 326  Q
    |||| ||||| ||||||||| |||  || |||||| ||||| |||||||||| ||| |  || ||||||||||||| ||||  |||||||| |||| |||    
T  16576452 aacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatcatatttgtcattaaagataaattaccccaaat 16576551  T
Q  327 t 327  Q
    |    
T  16576552 t 16576552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 10775027 - 10775118
Alignment:
Q  42 aatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaat 133  Q
    ||||||||| ||||||||| || ||||||||||| |||||| | | |||||||||||||| ||||||||| | ||| | |||||||||||||    
T  10775027 aatcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcgttccataatcgaat 10775118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 7997253 - 7997195
Alignment:
Q  43 atcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatg 101  Q
    ||||| |||||||||||| |||| || ||| ||||||||| ||| ||||||||||||||    
T  7997253 atcaattaccattttcatctctataatatctaacttcttcatttctttcattcaacatg 7997195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 10775198 - 10775252
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcatt 281  Q
    |||||||||||||||||| |  || ||||||||| |||| |||||||||||||||    
T  10775198 aacatcaaacttcttcatctctttcgttcaacatctaattttcatcttcttcatt 10775252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 34601624 - 34601550
Alignment:
Q  253 ttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaatt 327  Q
    |||||||||| || ||||||| |||| ||| |||||||||||||| |||| ||||| || ||||| || ||||||    
T  34601624 ttcaacatgtgatattcatctccttccttataaaatcgaatcatagttgtcattagagacaaattacctctaatt 34601550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 67967 - 68051
Alignment:
Q  233 aaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaatt 317  Q
    |||||||||||||| |||  ||| |||||| ||||||||||  ||||||  ||||||| |||||| |||| ||||| | ||||||    
T  67967 aaacttcttcatatccttcattctacatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaatt 68051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 52432671 - 52432763
Alignment:
Q  42 aatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaatt 134  Q
    |||||| |||||||||||| || ||||||| |||||||||| | |  |||||| |||| | ||||| |||||  |||| || |||||||||||    
T  52432671 aatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaatt 52432763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 16766 - 16862
Alignment:
Q  96 aacatgcgatcttcatctcctttgatccataatcgaattcggcttattattagggataaattgcctcgaattcatcaagggataatgtaggtttcac 192  Q
    |||||| ||||||||||||||||  |||| |||||||      || ||||||  ||||||||||||| |||||||||||||||||||||||| ||||    
T  16766 aacatgagatcttcatctcctttattccaaaatcgaaacataattgttattaaagataaattgcctccaattcatcaagggataatgtaggtgtcac 16862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 32166675 - 32166629
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatct 273  Q
    |||||||||||||||||| | |||| |||||||||||||||||||||    
T  32166675 aacatcaaacttcttcatctcctttattcaacatgtaatcttcatct 32166629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 29969125 - 29969253
Alignment:
Q  60 tttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggcttattatt-agggataaattg 158  Q
    |||| |||||||||||||||||| |    ||||||||||||| ||| |||||||| || | |||||||||||||||  ||| | ||| |||| ||||||     
T  29969125 tttcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaatta 29969224  T
Q  159 cctcgaattcatcaagggataatgtaggt 187  Q
     |   ||||||||||||| ||||||||||    
T  29969225 tccacaattcatcaaggggtaatgtaggt 29969253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 37010403 - 37010319
Alignment:
Q  49 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaat 133  Q
    |||||||||||| || | |||||||||||| ||| ||| ||||||| |||||| |||||  ||||||||   |||||||||||||    
T  37010403 taccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcgaat 37010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 37010385 - 37010276
Alignment:
Q  227 aacatcaaacttcttcatattctttg-ttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaa 325  Q
    |||||||||||| ||||| ||||||  || ||||||| ||||  |||| |||||||  | |||||||||||||||||||||||||  || || |||| ||    
T  37010385 aacatcaaacttattcat-ttctttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgttattaggggcaatttacccccaa 37010287  T
Q  326 ttcatgaaagg 336  Q
    ||||| |||||    
T  37010286 ttcattaaagg 37010276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 42054671 - 42054597
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctc 114  Q
    ||||||||||||||||||||| |  ||||||| ||| |||||  | |||||||||||| ||| ||||| ||||||    
T  42054671 acaatcaaataccattttcatcttcagaacataaaatttctttatctatttcattcaatatgtgatctccatctc 42054597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 36988 - 36907
Alignment:
Q  92 attcaacatgcgatcttcatctcctttgatccataatcgaattcggcttattattagggataaattgcctcgaattcatcaa 173  Q
    |||||||||| |||||||||||| |||| | ||||||||||| |  |||||||||| |  |||||| |||| ||||||||||    
T  36988 attcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaattacctccaattcatcaa 36907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 973146 - 973219
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatattt 300  Q
    ||||| ||| |||||||| | |||| |||||||||| ||||||||||  ||||||| ||||| |||||||||||    
T  973146 aacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatcatattt 973219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 2243374 - 2243289
Alignment:
Q  49 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatccataatcgaatt 134  Q
    |||||||||||| || |||||||||||||||||| | |  ||||||||||||| ||||| ||||| ||| | || | |||||||||    
T  2243374 taccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaatt 2243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 17739923 - 17740018
Alignment:
Q  89 ttcattcaacatgcgatcttcatctcctttgatccataatcgaattcggcttattattagggataaattgc-ctcgaattcatcaagggataatgta 184  Q
    |||||| |||||| ||| ||||||||||| | |||| |||||||| |  ||||||||||||||| |||| | ||| ||||||||||||| |||||||    
T  17739923 ttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattagggatgaatttcactc-aattcatcaaggggtaatgta 17740018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 2243356 - 2243305
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttc 278  Q
    |||||||||||||||||||| |||  |||||||||| |||| ||||||||||    
T  2243356 aacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttc 2243305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 7215363 - 7215322
Alignment:
Q  40 acaatcaaataccattttcatttctagaacatcaaacttctt 81  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  7215363 acaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 22780378 - 22780281
Alignment:
Q  233 aaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattcat 330  Q
    |||||||||||||| |||  |||||||||| |||||||||   ||| ||  | |||| ||||||| |||| |||||||||||||| || | |||||||    
T  22780378 aaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaatcaaatcatagttgtcattagggataaattacctccaattcat 22780281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 41264408 - 41264512
Alignment:
Q  227 aacatcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaa-aatcgaatcatatttgttattagggataaattgcccctaa 325  Q
    ||||| |||||| |||||||| ||  |||||||||| ||||||||||  ||| |||  | |||||||||||| |||||||||| | ||||||  || |||    
T  41264408 aacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattagaggtaaattaaccttaa 41264507  T
Q  326 ttcat 330  Q
    |||||    
T  41264508 ttcat 41264512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 32342564 - 32342624
Alignment:
Q  166 ttcatcaagggataatgtaggtttcactattttggttttttcctacaatcaaatatcattt 226  Q
    ||||||||||||| |||||||  |||| ||||| |||||||| ||||||||| ||||||||    
T  32342564 ttcatcaagggatgatgtaggcctcaccattttagttttttcttacaatcaattatcattt 32342624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 7556096 - 7556052
Alignment:
Q  286 aatcgaatcatatttgttattagggataaattgcccctaattcat 330  Q
    |||||||||||| ||||||||||||||||||| |||  |||||||    
T  7556096 aatcgaatcatagttgttattagggataaattaccctcaattcat 7556052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 39341237 - 39341360
Alignment:
Q  230 atcaaacttcttcatattctttgttcaacatgtaatcttcatcttcttcattaaaaaatcgaatcatatttgttattagggataaattgcccctaattca 329  Q
    ||||||||| ||||| | |||  |||||||||  |||| ||| | |||| ||  ||||| ||||| ||||| | ||||| | |||||| |||||||||||    
T  39341237 atcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcattagaggtaaattacccctaattca 39341336  T
Q  330 tgaaagggtgacgtagacctcacc 353  Q
    | ||||||| || |||||||||||    
T  39341337 tcaaagggtaacatagacctcacc 39341360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 20519353 - 20519279
Alignment:
Q  50 accattttcatttctagaacatcaaacttcttcctttatttcattcaacatgcgatcttcatctcctttgatcca 124  Q
    ||||||||||| || ||||| ||||| |||||| | | ||||||| |||||| ||||| ||||||||||| ||||    
T  20519353 accattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttcca 20519279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 5444 - 5370
Alignment:
Q  286 aatcgaatcata-tttgttattagggataaattgcccctaattcatgaaagggtgacgtagacctcaccaaaatg 359  Q
    |||||||||||  |||||||||||||||||||| |||| |||| || || |||||| ||||  ||||||||||||    
T  5444 aatcgaatcatgctttgttattagggataaattacccccaatttatcaacgggtgatgtaggtctcaccaaaatg 5370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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