View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_32 (Length: 418)
Name: NF4402_low_32
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 24423343 - 24423737
Alignment:
| Q |
9 |
atcataatttgtcataatctgatactatttttatgcaaaactttctacttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataata |
108 |
Q |
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| T |
24423343 |
atcataatttgtcataatttgatactatttttatgcaaaactttctacttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataata |
24423442 |
T |
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| Q |
109 |
tattggaagttgtgcagttgacccttaaaaatgtgaaaaatactcttttcaatgtaaaaattgcatttttgtttcattaagtagtaccccgaaagcacta |
208 |
Q |
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| T |
24423443 |
tattggaagttgtgcagttgacccttaaaaatgtgaaaaatactcttttcaatgtaaaaattgcatttttgtttcattaagtagtaccccgaaagcacta |
24423542 |
T |
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| Q |
209 |
gccagcatgacccggcatatagaagtaaatagtaaatcccaacttaaataatttttaacttacttcagttagatgcaaatttgaactctcactattattg |
308 |
Q |
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| T |
24423543 |
gccagcatgacccggcatatagaagtaaatagtaaatcccaacttaaataatttttaacttacttcagttagatgcaaatttgaactctcactattattg |
24423642 |
T |
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| Q |
309 |
ccaaataaaatttattggtattaaacttttcttattgaagaacgcttcttacattgcttccaagtaaagtgcattcaatgatgcaatgagtaaaa |
403 |
Q |
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| T |
24423643 |
ccaaataaaatttattggtattaaacttttcttattgaagaacgcttcttacattgcttccaagtaaagtgcattcaatgatgcaatgagtaaaa |
24423737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 24410561 - 24410445
Alignment:
| Q |
57 |
ttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataatatattggaagttgtgcagttgaccct-taaaaatgtgaaaaatactctt |
155 |
Q |
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| T |
24410561 |
ttttgatttagagcatttttaaattttaaagtaaacaaatatagtaataataaatttaaacttgtgcagccaaacctataaaaatgtaaaaaatactctt |
24410462 |
T |
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| Q |
156 |
ttcaatgtaaaaattgc |
172 |
Q |
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| T |
24410461 |
tttaatataaaagttgc |
24410445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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