View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_34 (Length: 409)
Name: NF4402_low_34
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 14833022 - 14833215
Alignment:
| Q |
27 |
tagtaggattatggt-aagatatattataatgtgcgtgtgt--ttaagaataagtagtaggattatggtcaagatttattataatgtgcgtggattatgg |
123 |
Q |
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| T |
14833022 |
tagtaggattatggtcaagatttattataatgtgcgcgtgtgcttaagaataagtagtaggattatagccaggatttattataatgtgcgtggattatgg |
14833121 |
T |
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| Q |
124 |
tcaagatatattataattgtgtactattatcatgtgcgtgaatgcaagtaaaatttgaaactttttgttagatcttgtttaattgtttcaagat |
217 |
Q |
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| T |
14833122 |
tcaagatatattataattgtgtactattatcatgtgcgtgaatgcaagtaaaatttgaaactttttgttagatcttgtttaattgttttaagat |
14833215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 209 - 391
Target Start/End: Original strand, 14833245 - 14833428
Alignment:
| Q |
209 |
tttcaagatatatagtaaaattgtgtactgttccgt-catcgtcgtttaaagtttccataatagttagtttccctccacccttcgatatggcaaaagaat |
307 |
Q |
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| T |
14833245 |
tttcaagatatatagtaaaattgtgtactgttccattcatcgtcgtctaaagtttccataatagttagtttccctccaactttcgttatggcagaagaat |
14833344 |
T |
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| Q |
308 |
tattccttaggattagagttgaaccagtcgtaccgccaccaccgcagaggcgggttgcagaagaggttgacgctgctgatcaac |
391 |
Q |
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| T |
14833345 |
tattccttaggattagagttgaaccagtcgcatcgccaccaccgcagaggcgggttgcagaagaggttgacgctgctgatcaac |
14833428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 14832959 - 14833057
Alignment:
| Q |
15 |
ggtagtataagttagtaggattatggtaagatatattataatgtgcgtgtgtttaagaataagtagtaggattatggtcaagatttattataatgtgcg |
113 |
Q |
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| T |
14832959 |
ggtagtataagttagtaggattatggtaagatatattataatgtgcgtgtgtttaagaataagtagtaggattatggtcaagatttattataatgtgcg |
14833057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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