View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_35 (Length: 402)
Name: NF4402_low_35
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 147 - 386
Target Start/End: Complemental strand, 11026960 - 11026721
Alignment:
| Q |
147 |
tatatttcacaatcgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtct |
246 |
Q |
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| T |
11026960 |
tatatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtct |
11026861 |
T |
|
| Q |
247 |
agattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgc |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026860 |
agattgggaatcaaaaggattgggaggtattggagttttgtctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgc |
11026761 |
T |
|
| Q |
347 |
cactgaatgcaccatagtcccacaatggccatttttcttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11026760 |
cactgaatgcaccatagtcccacaatggccatttttcttg |
11026721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 148 - 386
Target Start/End: Complemental strand, 10993503 - 10993265
Alignment:
| Q |
148 |
atatttcacaatcgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtcta |
247 |
Q |
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|||||| ||||| |||||||| || | |||||||||||||||||| | || || | |||||||||| ||||| | || || | ||||||||||||||| |
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| T |
10993503 |
atattttacaattgtaagtcattccaactcttgaattacatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtcta |
10993404 |
T |
|
| Q |
248 |
gattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgcc |
347 |
Q |
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| T |
10993403 |
gattgagaagcaaatggattgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgcc |
10993304 |
T |
|
| Q |
348 |
actgaatgcaccatagtcccacaatggccatttttcttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
10993303 |
actgaatgcaccatagtcccacaatggccattttccttg |
10993265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 148 - 386
Target Start/End: Complemental strand, 10907415 - 10907177
Alignment:
| Q |
148 |
atatttcacaatcgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtcta |
247 |
Q |
| |
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|||||| ||||| |||||||| |||| |||||||||||||||||| | || |||| |||||||||| ||| || | || || | |||||||| |||||| |
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| T |
10907415 |
atattttacaattgtaagtcattctaactcttgaattacatctaactcttgagttagttgtctagtaattgtagctccaccatttctcctaggctgtcta |
10907316 |
T |
|
| Q |
248 |
gattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgcc |
347 |
Q |
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| T |
10907315 |
gattgagaagcaaaaggattgggaggtattggagttttgtcgacatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgcc |
10907216 |
T |
|
| Q |
348 |
actgaatgcaccatagtcccacaatggccatttttcttg |
386 |
Q |
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||| ||||||||| ||||||||||| |||||||| |||| |
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| T |
10907215 |
actaaatgcaccagagtcccacaattgccattttccttg |
10907177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 148 - 386
Target Start/End: Complemental strand, 10931299 - 10931061
Alignment:
| Q |
148 |
atatttcacaatcgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtcta |
247 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||| || | || |||| |||||||||| || || | | || | ||||||||||||||| |
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| T |
10931299 |
atattttacaattgtaagtcaatctaactcttgaattacatccaactcttgagttagttgtctagtaattttagctccgccatttctcctaggttgtcta |
10931200 |
T |
|
| Q |
248 |
gattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgcc |
347 |
Q |
| |
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||||| ||| |||||||||| ||||||||||||||||| || | || | |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
10931199 |
gattgagaagcaaaaggatttggaggtattggagttttgtcgacatctccctccaacatctgaaccaccatttgcattgttggtcgatgcatagcatgcc |
10931100 |
T |
|
| Q |
348 |
actgaatgcaccatagtcccacaatggccatttttcttg |
386 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |
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| T |
10931099 |
actgaatgcaccataatcccacaatggccattttccttg |
10931061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 148 - 386
Target Start/End: Complemental strand, 11041662 - 11041424
Alignment:
| Q |
148 |
atatttcacaatcgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgcatcagtcctcctaggttgtcta |
247 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||| |||||||||| || | || |||| ||||||||| ||||| | | ||||||| ||||| |
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| T |
11041662 |
atatttcacaatttcaagtcaatctaactcgtgaatcacatctaaatcttgtgctagatgtcccgtagttgcaattgcactatttttcctaggccgtcta |
11041563 |
T |
|
| Q |
248 |
gattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgcc |
347 |
Q |
| |
|
||||| ||| |||| ||||| ||||||||||||||||| ||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11041562 |
gattgagaagcaaagggatttggaggtattggagttttgtcttcatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgcc |
11041463 |
T |
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| Q |
348 |
actgaatgcaccatagtcccacaatggccatttttcttg |
386 |
Q |
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||||||||||||| |||||||| |||||||||||||||| |
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| T |
11041462 |
actgaatgcaccaaagtcccacgatggccatttttcttg |
11041424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 11027074 - 11026998
Alignment:
| Q |
34 |
ccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
110 |
Q |
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| T |
11027074 |
ccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
11026998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 9300649 - 9300611
Alignment:
| Q |
344 |
tgccactgaatgcaccatagtcccacaatggccattttt |
382 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||| |
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| T |
9300649 |
tgccactgaatgcaccataatcccacaattgccattttt |
9300611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 8962896 - 8962828
Alignment:
| Q |
304 |
catctgaaccaccatttgcattgatggtcgatccatagcatgccactgaatgcaccatagtcccacaat |
372 |
Q |
| |
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| T |
8962896 |
catctgcaccaccattttcatggctggtcgatgcactgaatgccactgaatgcaccaaagtccgacaat |
8962828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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