View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_low_37 (Length: 355)
Name: NF4402_low_37
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 72 - 337
Target Start/End: Complemental strand, 47689611 - 47689346
Alignment:
| Q |
72 |
gataattattttaccttataaacagttccaaaaccaccctcaccaagtttatttgcatcagagaagttgcttgtagctattctgatggtttcaaagtcaa |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47689611 |
gataattattttaccttataaacagttccaaaaccaccctcaccaagtttatttgcatcagagaagttgcttgtagctattctgatggtttcaaagtcaa |
47689512 |
T |
|
| Q |
172 |
attgcaacaaatctccaactttaagatcatcaccagtttcagcttcagattcatcttcatttttcccttggcctggatatgtgttttcacaaatattttg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47689511 |
attgcaacaaatctccaactttaagatcatcaccagtttcagcttcagattcatcttcatttttcccttggcctggatatgtgttttcacaaatattttg |
47689412 |
T |
|
| Q |
272 |
ttattttagttgatattatagcacaatatgtgtagtctacatgaactcatagttttaactcttttc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47689411 |
ttattttagttgatattatagcacaatatgtgtagtctacatgaactcatagttttaactcttttc |
47689346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 82 - 271
Target Start/End: Complemental strand, 47678152 - 47677963
Alignment:
| Q |
82 |
ttaccttataaacagttccaaaaccaccctcaccaagtttatttgcatcagagaagttgcttgtagctattctgatggtttcaaagtcaaattgcaacaa |
181 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
47678152 |
ttaccttataaacagttccaaatccaccttgaccaagcttatttgcatcagagaagttgcttgtagctaatctgatggttgcaaagtcaaattgcaacaa |
47678053 |
T |
|
| Q |
182 |
atctccaactttaagatcatcaccagtttcagcttcagattcatcttcatttttcccttggcctggatatgtgttttcacaaatattttg |
271 |
Q |
| |
|
|| ||||||||||||| || ||||| |||||||||| ||||||||||||||| |||||||| | ||||||||| |||||||||||| |
|
|
| T |
47678052 |
gtcgccaactttaagattattaccagcttcagcttcatcttcatcttcatttttatcttggcctagtcatgtgtttttacaaatattttg |
47677963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 47689670 - 47689634
Alignment:
| Q |
13 |
aatatcatgatatatgcatgtgtttgagtgtttcaat |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47689670 |
aatatcatgatatatgcatgtgtttgagtgtttcaat |
47689634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 23189144 - 23189090
Alignment:
| Q |
85 |
ccttataaacagttccaaaaccaccctcaccaagtttatttgcatcagagaagtt |
139 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| || |||||||| |||||||| |
|
|
| T |
23189144 |
ccttataaacaggtccaaagccaccttcaccaagcttgtttgcatctgagaagtt |
23189090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 21422742 - 21422782
Alignment:
| Q |
84 |
accttataaacagttccaaaaccaccctcaccaagtttatt |
124 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
21422742 |
accttataaacaggtccaaaacctccctctccaagtttatt |
21422782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University