View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_39 (Length: 354)

Name: NF4402_low_39
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_39
NF4402_low_39
[»] chr3 (1 HSPs)
chr3 (16-336)||(1154474-1154794)
[»] chr7 (1 HSPs)
chr7 (190-335)||(29622475-29622620)
[»] chr5 (7 HSPs)
chr5 (166-335)||(35386813-35386982)
chr5 (196-335)||(35371301-35371440)
chr5 (222-335)||(35411459-35411572)
chr5 (166-335)||(23935846-23936012)
chr5 (222-331)||(35426217-35426326)
chr5 (233-305)||(35367680-35367752)
chr5 (222-334)||(35755645-35755757)
[»] chr2 (3 HSPs)
chr2 (181-335)||(30626843-30626997)
chr2 (181-335)||(30663769-30663923)
chr2 (181-335)||(30672449-30672603)
[»] chr1 (1 HSPs)
chr1 (223-335)||(10414954-10415066)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 1154794 - 1154474
Alignment:
Q  16 attttccattagtcaaaaaagatatgtgatggaagtattggaaagatttggaatggacaaaagcaattctgtccactatccaactgctcttggacagaag 115  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154794 atttttcattagtcaaaaaagatatgtgatggaagtattggagagatttggaatggacaaaagcaattctgtccactatccaactgctcttggacagaag 1154695  T
Q  116 cttcgaaaggatcatgatggcatgaagattgatagtacttactaaacatcttttcttatcacaatagcaatggttcctagcatggaatctttgatttgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154694 cttcgaaaggatcatgatggcatgaagattgatagtacttactaaacatcttttcttatcacaatagcaatggttcctagcatggaatctttgatttgat 1154595  T
Q  216 ttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacacttt 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1154594 ttcattcaacttaacaataacatgttttatcaacattcgatgagcaggaaactcttcagtacatgcaactccaattctagcaaacatcaccaaacacttt 1154495  T
Q  316 ttaatcttgttttccacaatt 336  Q
    |||||||||||||||||||||    
T  1154494 ttaatcttgttttccacaatt 1154474  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 29622475 - 29622620
Alignment:
Q  190 tcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaa 289  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||| ||| || ||||||||||||||    
T  29622475 tcctagcatggaaactttgatttgatttcattcaacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaa 29622574  T
Q  290 ttctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  29622575 ttctagcaaacatcaccaaacaattcctaatcttgttttccacaat 29622620  T

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Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 35386982 - 35386813
Alignment:
Q  166 ttttcttatcacaatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaa 265  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| ||  |    
T  35386982 ttttcttatcacagtagcagcggttcctagcatggaaactttgatttgatttgattcaacttaactataacatcttttatcaacattcgatgagtagtga 35386883  T
Q  266 acccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
     | ||| || |||||| |||||||||  |||||||||||||||||| ||  |||||||||||||||||||    
T  35386882 cctctttagaacatgcgactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaat 35386813  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 35371440 - 35371301
Alignment:
Q  196 catggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctag 295  Q
    ||||||| | ||||||||||||||||||| ||| | ||| ||| |||||||||||||| |||||||||| || |||||| ||||||||||||||||  ||    
T  35371440 catggaaacattgatttgatttcattcaaattagctatagcatcttttatcaacattcgatgagcaggagactcttcagaacatgcaactccaattgcag 35371341  T
Q  296 caaacatcaccaaacactttttaatcttgttttccacaat 335  Q
    |||||||||||||||| ||  |||||||||||||||||||    
T  35371340 caaacatcaccaaacaattcctaatcttgttttccacaat 35371301  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 35411572 - 35411459
Alignment:
Q  222 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 321  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||| | ||||  ||||||||||| ||||||||||||||||||||||| ||  |||||    
T  35411572 caacttaacgataacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaacatcaccaaacaattcctaatc 35411473  T
Q  322 ttgttttccacaat 335  Q
    ||||||||||||||    
T  35411472 ttgttttccacaat 35411459  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 335
Target Start/End: Original strand, 23935846 - 23936012
Alignment:
Q  166 ttttcttatcacaatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaa 265  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||| ||||||||||  |||||| ||||||   ||||   |||||| |      
T  23935846 ttttcttatcacagtagcaattgttcctagcatggaaactttgattttatttcactcaacttaactgtaacatcttttatggccatttgttgagcaaggg 23935945  T
Q  266 acccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
     | |||    | |||||||| ||||||||||||||||||||||| || |  |||||||||||||||||||    
T  23935946 gcactt---aaaatgcaacttcaattctagcaaacatcaccaaaaacctcctaatcttgttttccacaat 23936012  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 35426326 - 35426217
Alignment:
Q  222 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 321  Q
    ||||||||| ||||||| |||| | | |||||  |||| ||||||  |||||| |||||||| ||| ||| ||||||||||||| |||||||  || ||     
T  35426326 caacttaactataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaacactcctttatg 35426227  T
Q  322 ttgttttcca 331  Q
    ||||||||||    
T  35426226 ttgttttcca 35426217  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 35367752 - 35367680
Alignment:
Q  233 taacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcac 305  Q
    |||||| |||||||||||||| ||||| ||| ||  |||| | |||||||||||| ||| |||||||||||||    
T  35367752 taacattttttatcaacattcgatgagtagggaattcttcggaacatgcaactcctattttagcaaacatcac 35367680  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 35755757 - 35755645
Alignment:
Q  222 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 321  Q
    ||||||||  ||||||| |||| | | |||||  |||| ||||||  |||||| |||||||||||| ||| ||||||||||||| | |||||  || ||     
T  35755757 caacttaattataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatg 35755658  T
Q  322 ttgttttccacaa 334  Q
    |||||||||||||    
T  35755657 ttgttttccacaa 35755645  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 30626997 - 30626843
Alignment:
Q  181 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 280  Q
    ||||| || ||||||||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||| | |||||    
T  30626997 agcaacggatcctagcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgattagatggaaactcttctgaacatg 30626898  T
Q  281 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
    ||||||||||| ||||||||||||| || || ||  |||||||||||||||||||    
T  30626897 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaat 30626843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 30663923 - 30663769
Alignment:
Q  181 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 280  Q
    ||||| || |||| |||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||||| |||||    
T  30663923 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30663824  T
Q  281 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
    ||||||||||| ||||||||||||| || || ||  |||||||||||||||||||    
T  30663823 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaat 30663769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 30672603 - 30672449
Alignment:
Q  181 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 280  Q
    ||||| || |||| |||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||||| |||||    
T  30672603 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30672504  T
Q  281 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 335  Q
    ||||||||||| ||||||||||||| || || ||  |||||||||||||||||||    
T  30672503 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaat 30672449  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 10414954 - 10415066
Alignment:
Q  223 aacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatct 322  Q
    |||||| | ||||||| |||||||||||||| ||||| |||||   |||||| |||||||||||| |||  | ||||||||||||||||||| |||||||    
T  10414954 aacttatctataacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaacatcaccaaacacttcttaatct 10415053  T
Q  323 tgttttccacaat 335  Q
    | |||||||||||    
T  10415054 tattttccacaat 10415066  T

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