View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_41 (Length: 352)
Name: NF4402_low_41
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 51856302 - 51856581
Alignment:
| Q |
1 |
aataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856302 |
aataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatt |
51856401 |
T |
|
| Q |
101 |
ttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856402 |
ttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgaga |
51856501 |
T |
|
| Q |
201 |
ctgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacccttcaaacgagattgattaaa |
280 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
51856502 |
ctgattttcatctctaattttcgtctaaaaaaacagcaatataagagtggcttgttacccttcaaactagatcgattaaa |
51856581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 51856591 - 51856659
Alignment:
| Q |
264 |
aaacgagattgattaaagtcacacattgcaggaccaatttcac-agaatcatgtcttattattaagttc |
331 |
Q |
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| T |
51856591 |
aaacgagattgattaaagtcacacattgcaggaccaatttcactagaatcatgtcttattattatgttc |
51856659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 51856680 - 51856710
Alignment:
| Q |
237 |
caatataagagtggcttgttacccttcaaac |
267 |
Q |
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| T |
51856680 |
caatataagagtggcttgttacccttcaaac |
51856710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 8945488 - 8945754
Alignment:
| Q |
1 |
aataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945488 |
aataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatt |
8945587 |
T |
|
| Q |
101 |
ttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945588 |
ttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgaga |
8945687 |
T |
|
| Q |
201 |
ctgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacccttcaaac |
267 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8945688 |
ctgattttcatctataattttcgtctaaaaaaacagcaatataagagtggcttgttacccttcaaac |
8945754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 128536 - 128421
Alignment:
| Q |
98 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttg |
197 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||| ||||||||||||||| | |||||||||||||| |
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| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
|
| Q |
198 |
agactgattttcatctc |
214 |
Q |
| |
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||||| ||||||||||| |
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|
| T |
128437 |
agactaattttcatctc |
128421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 45480436 - 45480376
Alignment:
| Q |
264 |
aaacgagattgattaaagtcacacattgcaggaccaatttcac-agaatcatgtcttatta |
323 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||| || |||||||| ||||||| |
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|
| T |
45480436 |
aaacgagattgattaaagtcacacgttgcagtaccaatttgactagaatcataacttatta |
45480376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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