View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_42 (Length: 347)
Name: NF4402_low_42
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 10995231 - 10994900
Alignment:
| Q |
4 |
atgtccaataatataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcat |
103 |
Q |
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| T |
10995231 |
atgtccaataacataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcat |
10995132 |
T |
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| Q |
104 |
ctccttcacatcagagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaag |
203 |
Q |
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| T |
10995131 |
ctccttcacatcagagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaag |
10995032 |
T |
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| Q |
204 |
aagaagaatagtcttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctga |
303 |
Q |
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| T |
10995031 |
aagaagaatagtcttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccaaaattaattctga |
10994932 |
T |
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| Q |
304 |
agagtgcatgagtgacatagaatactataact |
335 |
Q |
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| T |
10994931 |
agagtgcatgagtgacatagaatactataact |
10994900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 11000626 - 11000533
Alignment:
| Q |
4 |
atgtccaataatataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctg |
97 |
Q |
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| T |
11000626 |
atgtccaataacataagcccaatcttattatctaacaaattagacaacaatcactagaagatttaaaaatcgctcttgaactagaatcagcctg |
11000533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 10999213 - 10999119
Alignment:
| Q |
240 |
aaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgagtgacatagaatactataact |
335 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
10999213 |
aaattgcattcacactcagtagttggaaatgtattcattttagat-agccgaaattaattctttcgagtgcatgaatgacatagaatactataact |
10999119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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