View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_45 (Length: 342)
Name: NF4402_low_45
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 35946392 - 35946070
Alignment:
| Q |
5 |
ttatctaacctatgtgagactcttgaaaatgcaggactccaaataatctaagacaatctagccggtctaccttttatgttagtcttccattgactcagaa |
104 |
Q |
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| T |
35946392 |
ttatctatccgatctgagactcttgaaaatgca---ctccaaacaatctaagacaatctagccggtctaccttttatgttagtcttccattgactcagaa |
35946296 |
T |
|
| Q |
105 |
ggcaagagtgaatttctttgcttcttggttttacttgtcagtccttaacgtgagagttggagacattggtcattggtaattgcaaatttctatgaagctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35946295 |
ggcaagagtgaatttctttgcttcttggttttacttgtcagtccttaacgtgagag---gagacattggtcattggtaattgcaaatttctatgaagctt |
35946199 |
T |
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| Q |
205 |
ctgttaacttttactggacataaggcatacacgaatccttattagtcaagaaaagatataggaattgaaaccatactattatttaaatatggattacgac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35946198 |
ctgttaacttttactggacataaggcatacacgaatccttattagtcaagaaaagatataggaattgaaaccatactattatttaaatatggattacgac |
35946099 |
T |
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| Q |
305 |
gtcacgttaaatttttctatggttgatat |
333 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
35946098 |
gtcacgttaaacttttctatggttgatat |
35946070 |
T |
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