View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_48 (Length: 330)
Name: NF4402_low_48
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 21615215 - 21615506
Alignment:
| Q |
18 |
tatcatacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagagttcattgaattgttccatgttgccggagacaaaccttt |
117 |
Q |
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| T |
21615215 |
tatcatacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagagttcattgaattgttccatgtttccggagacaaaccttt |
21615314 |
T |
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| Q |
118 |
caacctaaatattaaacattttgctcacttaactaatgattgaacttatattacagttttaaagatatgaaataatttaattccaccaaaatttttgaag |
217 |
Q |
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| T |
21615315 |
caacctaagtattaaacattttgctcacttaactaatgattgaacttatattacagttttaaagatatgaaataatttaattccaccaaaaattttgaag |
21615414 |
T |
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| Q |
218 |
aaccaaaaatagagttgtaacacatgaagttacattttgacttaagattggtctctcaaaaaagaaagtacaaccacgactataactccaat |
309 |
Q |
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| T |
21615415 |
aaccaaaaatagagttgtaacacatgaagttacattttgacttaagattggtctctcaaaaaagaaagtacaaccacgactataactccaat |
21615506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 31178173 - 31178040
Alignment:
| Q |
23 |
tacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagagttcattgaattgttccatgttgccggagacaaacctttcaacc |
122 |
Q |
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||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||| || ||| ||||||||||||||| |
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| T |
31178173 |
tacaaagatgctgcagagaaggaaaaacgttttcaaatattcaagaataatgtggagttcattgaattgttcaatgctgttggaaacaaacctttcaacc |
31178074 |
T |
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| Q |
123 |
taaatattaaacattttgctcacttaactaatga |
156 |
Q |
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| T |
31178073 |
ttagtattaaccattttgctgacctaactaatga |
31178040 |
T |
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