View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_49 (Length: 313)

Name: NF4402_low_49
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_49
NF4402_low_49
[»] chr3 (3 HSPs)
chr3 (111-217)||(38270113-38270219)
chr3 (252-303)||(38270254-38270305)
chr3 (1-41)||(38270015-38270055)
[»] chr1 (1 HSPs)
chr1 (114-162)||(42886483-42886531)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 38270113 - 38270219
Alignment:
Q  111 caaaggttatacacagacacagaaacacaccctttgcacaattatgttaaacaacgcacattcaacgatcattcaccttttcactctcttaataaattca 210  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38270113 caaaggttatacacagacaaagaaacacaccctttgcacaattatgttaaacaacgcacattcaacgatcattcaccttttcactctcttaataaattca 38270212  T
Q  211 tccactg 217  Q
    || ||||    
T  38270213 tctactg 38270219  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 38270254 - 38270305
Alignment:
Q  252 taatatatcaaattaaaatacttatgagattcactttatttttatgtctgtg 303  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  38270254 taatatatcaaattcaaatacttatgagattcactttatttttatgtatgtg 38270305  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38270015 - 38270055
Alignment:
Q  1 tcgattccctcgggatctgtgttcgccatctccgacatcgt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38270015 tcgattccctcgggatctgtgttcgccatctccgacatcgt 38270055  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 42886483 - 42886531
Alignment:
Q  114 aggttatacacagacacagaaacacaccctttgcacaattatgttaaac 162  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42886483 aggttatacacagacacataaacacaccctttgcacaattatgttaaac 42886531  T

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