View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_58 (Length: 260)
Name: NF4402_low_58
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 27444486 - 27444395
Alignment:
| Q |
70 |
tcagaagaacaaatttccggttgcaagattttttggcataatttctggtattgtttttggggtcgcctgcttaatggtagttgcatgggttt |
161 |
Q |
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| T |
27444486 |
tcagaagaacaaatttccggttgcaagattttttggcataatttctggtattgtttttggggtcgcctgcttaatggtagttgcatgggttt |
27444395 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 27444360 - 27444279
Alignment:
| Q |
161 |
tcaagcggatgttcactgtctcaatgaaatagtttcacatccttgtcattatagagatgaaagtgttccatcgagtagtatt |
242 |
Q |
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| T |
27444360 |
tcaagcggatgttcacagtctcaatgaaatagtttcacatccttgtcattatagagatgaaaatgttccatcgagtagtatt |
27444279 |
T |
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