View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_59 (Length: 260)
Name: NF4402_low_59
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_59 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 18977080 - 18977329
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattttcatttaaggtaaatgaatatcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18977080 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattttcatttaaggtaaatgaatatcg |
18977179 |
T |
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| Q |
111 |
ctttgtatcaattagtgcttgaaagaccaacaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctactatacaat |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18977180 |
ctttgtatcaattagtgcttgaaagaccagcaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctactatacagt |
18977279 |
T |
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| Q |
211 |
caccaattattcacacctagaagagtaattggctgctcctttgcatcttc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18977280 |
caccaattattcacacctagaagagtaattggctgctcctttgcatcttc |
18977329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 24933908 - 24934157
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattttcatttaaggtaaatgaatatcg |
110 |
Q |
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| T |
24933908 |
caaaggctcataattctcattaaatggtctccataaatttttaactttcttgatgcatagaatcatgctctttattttcatttaaggtaaatgaatatcg |
24934007 |
T |
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| Q |
111 |
ctttgtatcaattagtgcttgaaagaccaacaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctactatacaat |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24934008 |
ctttgtatcaattagtgcttgaaagaccagcaatgtaatcaaccaccacttattcaggaatcgtttcttctaatcggtctcaaattatctactataaaat |
24934107 |
T |
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| Q |
211 |
caccaattattcacacctagaagagtaattggctgctcctttgcatcttc |
260 |
Q |
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| T |
24934108 |
caccaattattcacacctagaagagtaattggttgctcctttgcatcttc |
24934157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 11007303 - 11007379
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattt |
87 |
Q |
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| T |
11007303 |
caaaggctcataattctcattaaatggtctccacaaattttcaactttcttgatgcaccgaatcacgctctctattt |
11007379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 12725571 - 12725526
Alignment:
| Q |
16 |
gctcataattctcattaaatggtctccataaattttcaactttctt |
61 |
Q |
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| T |
12725571 |
gctcataattttcattaaatggtctccataaatttccaactttctt |
12725526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 69 - 260
Target Start/End: Complemental strand, 9366405 - 9366213
Alignment:
| Q |
69 |
agaatcatgctctttattttcatttaaggtaaatgaatatcgcttt-gtatcaattagtgcttgaaagaccaacaatgtaatcaaccaccacttattcaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
9366405 |
agaatcatgctctttattttcatttaaggtaaatgaatatcgcttttgtatcaattagtgcttgaaagaccagcattgtaatcaaccaccacttattcaa |
9366306 |
T |
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| Q |
168 |
gaatcgtttcttctaatcggtctcaaattatctactatacaatcaccaattattcacacctagaagagtaattggctgctcctttgcatcttc |
260 |
Q |
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| T |
9366305 |
gaatcgtttcttctaatcggtctcaaattatctactatacaatgaccaattattcacacccagaagagtaattggctgctcctttgcatcttc |
9366213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 6476771 - 6476695
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattt |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||| |
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| T |
6476771 |
caaaggctcataattctcattaaatggtctccataaatttccaactttcttgatgtacggaatcacgctctttattt |
6476695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 10554618 - 10554694
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattt |
87 |
Q |
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| T |
10554618 |
caaaggctcataattctcattaaatggtttccataaatttccaactttcttgatgtacggaatcacgctctttattt |
10554694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 19080457 - 19080533
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcatgctctttattt |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||| |
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| T |
19080457 |
caaaggctcataattctcattaaatggtctccataaatttccaactttcttgatgtacggaatcacgctctttattt |
19080533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 46168214 - 46168265
Alignment:
| Q |
16 |
gctcataattctcattaaatggtctccataaattttcaactttcttgatgca |
67 |
Q |
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| T |
46168214 |
gctcataattttcattaaatggtctccataaatttccaactttcttgctgca |
46168265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 11349332 - 11349258
Alignment:
| Q |
186 |
ggtctcaaattatctactatacaatcaccaattattcacacctagaagagtaattggctgctcctttgcatcttc |
260 |
Q |
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||||||||||||||||||||| | |||||||||||||||| || ||||||||||| || |||||||||||||| |
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| T |
11349332 |
ggtctcaaattatctactataacaccaccaattattcacactcagtagagtaattggatgttcctttgcatcttc |
11349258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 11349417 - 11349367
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttctt |
61 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
11349417 |
caaaggctcacaattctcattaaaaagtctccataaattttcacctttctt |
11349367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 8548891 - 8548956
Alignment:
| Q |
11 |
caaaggctcataattctcattaaatggtctccataaattttcaactttcttgatgcatagaatcat |
76 |
Q |
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|||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
8548891 |
caaaggcttataattcttattacatggtctccataaattttcaactttctttatgcaccgaatcat |
8548956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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