View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_low_60 (Length: 258)
Name: NF4402_low_60
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 9373399 - 9373618
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9373399 |
atggcaagcaacaagtaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatcaagacat |
9373498 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9373499 |
gggaagccacatcaacatccacatctgattcaattaccaatggcctcttcttgcttgaagatttgtatatatctttggaagatcttctaaatatgacatc |
9373598 |
T |
|
| Q |
236 |
aacacagaatcttgtttctc |
255 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
9373599 |
aacacagaagcttgtttctc |
9373618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 9305598 - 9305379
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9305598 |
atggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatgaagacat |
9305499 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9305498 |
gggaagccacatcaacatccacatctgattcaattaccaatggcctcttcttgcttgaagatttgtatatatctttggaagatcttctaaatatgacatc |
9305399 |
T |
|
| Q |
236 |
aacacagaatcttgtttctc |
255 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
9305398 |
aacacagaagcttgtttctc |
9305379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 9302001 - 9301761
Alignment:
| Q |
15 |
caaattaaaatcgcagttaagatggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaag |
114 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||| |||| |||||||| ||||| ||| ||| |
|
|
| T |
9302001 |
caaattaaaagagcagttaagatggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatccaaactccactagaattgaaaaag |
9301902 |
T |
|
| Q |
115 |
agctaaccaaaatcaagacatgggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttgga |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
9301901 |
agctaaccaaaatgaagacatgggaagccacatcaacatccacatctgattcaattacaaatggcctcttcttgcttgaagatttgtatatatctttgga |
9301802 |
T |
|
| Q |
215 |
agatcttctaaatatgacatcaacacagaatcttgtttctc |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
9301801 |
agatcttctaaatttgacatcaacacagaagcttgtttctc |
9301761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 9297765 - 9297560
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9297765 |
atggcaagcaacaagtaccatgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatcaagacat |
9297666 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| |||| |
|
|
| T |
9297665 |
gggaagccacatcaacatccacatctgattcaattaccactggcctttcctttcttgaagatttgtatatttctttggaagatcttctcaacatgtcatc |
9297566 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9297565 |
aacaca |
9297560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 9293158 - 9292953
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| |||||| ||||| |||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293158 |
atggcaagcaacaattaccacgttcgctcaaacagttttccttctcaatctcatcctaactccacaagaatagaacaagagctaaccaaaatcaagacat |
9293059 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9293058 |
gggaagccacatcaacatccacatctgattcaattaccactggcctttcctttcttgaagatttgtatatttctttggaagatcttctcaatatgtcatc |
9292959 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9292958 |
aacaca |
9292953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 9352127 - 9351922
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9352127 |
atggcaaacaccaagtatcatgttcgctcaaacagttttccttctcaatcacatcccaactccacaagaatagaacaagagctatgcaaaatcaagacat |
9352028 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
9352027 |
gggaagccacatcaacatccacatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttccttggaagatcttctcaatatgtcatc |
9351928 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9351927 |
aacaca |
9351922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 9332399 - 9332194
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9332399 |
atggcaaacaccaagtatcatgttcgctcaaacagttttccttctcaatcacatcccaactccacaagaatagaacaagagctatgcaaaatcaagacat |
9332300 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
9332299 |
ggaaagccacatcaacatccacatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttccttggaagatcttctcaatatgtcatc |
9332200 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9332199 |
aacaca |
9332194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 9288629 - 9288424
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||||||| |||| |||| || |||||||||| |||||| |||| ||||| ||||||| |
|
|
| T |
9288629 |
atggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaacacctcaagaatagatcaagagttaacaaaaatgaagacat |
9288530 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9288529 |
gggaagccacatcaacatccacatctcattcaattaccaatggcctttcatttcttgaagatttgtatatttctttggaagatcttctcaatatgtcatc |
9288430 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9288429 |
aacaca |
9288424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 9367493 - 9367698
Alignment:
| Q |
36 |
atggcaatcaacaagtaccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacat |
135 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||||||| |||| ||| || ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
9367493 |
atggcaagcaacaattaccatgttcgctcaaacagttttccttctcaatctcatcctaatacctcaagattagaacaagagctaaccaaaattaagacat |
9367592 |
T |
|
| Q |
136 |
gggaagccacatcaacatccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatc |
235 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
9367593 |
gggaagccacatcaacatcgacatctgattcaattaccaatggcctttcatttcttgaagatttgtatatttctttggaaaatcttctcaatatgtcatc |
9367692 |
T |
|
| Q |
236 |
aacaca |
241 |
Q |
| |
|
|||||| |
|
|
| T |
9367693 |
aacaca |
9367698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 9309884 - 9310074
Alignment:
| Q |
51 |
taccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacatgggaagccacatcaa |
150 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||| | |||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
9309884 |
taccatgttcgctcaaacagttttccttctcaatctcatccaagctccactagaattgaacaagagttaaccaaaatgaagacatgggaagccacatcaa |
9309983 |
T |
|
| Q |
151 |
catccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatcaacaca |
241 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
9309984 |
catccacatctgattcaattaccactggcctttcctttcttgaagatttgtatatttctttggaagatcttctcaacatgtcatcaacaca |
9310074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 9356292 - 9356482
Alignment:
| Q |
51 |
taccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacatgggaagccacatcaa |
150 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||| |||| | |||||||||||| |||||||| ||| ||||| |||||||||||||| ||||||| |
|
|
| T |
9356292 |
taccatgttcgctcaaatagctttccttctcaatcccatccaagctccacaagaattgaacaagatttaagaaaaatgaagacatgggaagctacatcaa |
9356391 |
T |
|
| Q |
151 |
catccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatcaacaca |
241 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
9356392 |
catccacatctgattcaattaccactggcctttcctttcttgaagatttgtatatttctttggatgatcttctacatatgtcatcaacaca |
9356482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 9348910 - 9349100
Alignment:
| Q |
51 |
taccatgttcgctctaacagttttccatctcaatcacatcataactccacaagaatagaacaagagctaaccaaaatcaagacatgggaagccacatcaa |
150 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| |||| | |||| | ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
9348910 |
taccatgttcgctcaaatagttttccttctcaatctcatccaagctcctctagaattgaacaagagttaaccaaaatgaagacatgggaagccacatcaa |
9349009 |
T |
|
| Q |
151 |
catccaaatctgattcaattaccaatggccttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatcaacaca |
241 |
Q |
| |
|
|||||| |||||| |||||||| | ||||||| ||| ||||||||||||||||| |||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
9349010 |
catccacatctgagtcaattactaccggcctttcctttcttgaagatttgtatatatctttggaggattttctacatatgtcatcaacaca |
9349100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 31466741 - 31466799
Alignment:
| Q |
180 |
cttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatcaac |
238 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| |||||||||||||| || ||| ||||||| |
|
|
| T |
31466741 |
ctttccttgattgaagaattgtatatttcattggaagatcttctcaacatggcatcaac |
31466799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 31476587 - 31476645
Alignment:
| Q |
180 |
cttttcttgcttgaagatttgtatatttctttggaagatcttctaaatatgacatcaac |
238 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||| || ||| ||||||| |
|
|
| T |
31476587 |
ctttccttgcttgaagatttgtatatgtcaatggaagatcttctcaacatggcatcaac |
31476645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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