View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_61 (Length: 249)
Name: NF4402_low_61
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 23522504 - 23522280
Alignment:
| Q |
19 |
agaaggtgtggtgggacctataaaacagagaggggaaggaaaaggtggggactcttacattacatctatggatggacaattgggtctgatccatctcaga |
118 |
Q |
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| T |
23522504 |
agaaggtgtggtgggacctataaaacagagaggggaaggaaaaggtggggactcttacattacatctatggatggacaattgggtctgatccatctcaga |
23522405 |
T |
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| Q |
119 |
gtgaattgcctgacaatcgccacaagactgcctttgccttctcaaagtaccacctccctttcacttatttttggatccattcattcacatccatttctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522404 |
gtgaattgcctgacaatcgccacaagactgcctttgccttctcaaagtaccacctccctttcacttatttttggatccattcattcacatccatttctat |
23522305 |
T |
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| Q |
219 |
aaactcaatagtattatctacccac |
243 |
Q |
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|||||| |||||| ||| ||||||| |
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| T |
23522304 |
aaactctatagtagtatatacccac |
23522280 |
T |
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