View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_64 (Length: 247)
Name: NF4402_low_64
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 258362 - 258586
Alignment:
| Q |
1 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttag |
100 |
Q |
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| T |
258362 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttag |
258457 |
T |
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| Q |
101 |
ttttactatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaa |
200 |
Q |
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| T |
258458 |
ttt-actatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaa |
258546 |
T |
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| Q |
201 |
ggccctaacgctctcaaactcggaatgtgtagatcctatg |
240 |
Q |
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| T |
258547 |
ggccctaacgctctcaaactcggcatgtgtagatcctatg |
258586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 657559 - 657335
Alignment:
| Q |
1 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
657559 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttag |
657464 |
T |
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| Q |
101 |
ttttactatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaa |
200 |
Q |
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| T |
657463 |
ttt-actatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaa |
657375 |
T |
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| Q |
201 |
ggccctaacgctctcaaactcggaatgtgtagatcctatg |
240 |
Q |
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| T |
657374 |
ggccctaacgctctcaaactcggcatgtgtagatcctatg |
657335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 843294 - 843070
Alignment:
| Q |
1 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
843294 |
ctgtatgtatttcatgttcttcaccacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttag |
843199 |
T |
|
| Q |
101 |
ttttactatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaa |
200 |
Q |
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| T |
843198 |
ttt-actatgatgcttgttgatgattaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaa |
843110 |
T |
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| Q |
201 |
ggccctaacgctctcaaactcggaatgtgtagatcctatg |
240 |
Q |
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| T |
843109 |
ggccctaacgctctcaaactcggcatgtgtagatcctatg |
843070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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