View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_65 (Length: 247)
Name: NF4402_low_65
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 46552017 - 46552253
Alignment:
| Q |
4 |
cactatcactatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctcttttt |
103 |
Q |
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| T |
46552017 |
cactatcactatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctcttttt |
46552116 |
T |
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| Q |
104 |
atttgaaattttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataaacccacacaatgg |
203 |
Q |
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| T |
46552117 |
atttgaaattttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataagcccacacaatgg |
46552216 |
T |
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| Q |
204 |
cctgataatgctggcaaacatctatctttcacctatg |
240 |
Q |
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| T |
46552217 |
cctgataatgctggcaaacatctatctttcacctatg |
46552253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 1028581 - 1028806
Alignment:
| Q |
15 |
tatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctctttttatttgaaattt |
114 |
Q |
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| T |
1028581 |
tatcaaaattacaaaacatgcctaaattacgtacataattgaattcaatgttcgctatttcttgcattttatatcctacccttctttttatttgaaattt |
1028680 |
T |
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| Q |
115 |
tcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataaacccacacaatggcctgataatgc |
214 |
Q |
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| T |
1028681 |
tcactttgggattatatgatttaatgagttaataaataaaatgcttgagttggtagcattgtgaaatcaatcctaaacccacacaatggcctgatagtgc |
1028780 |
T |
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| Q |
215 |
tggcaaacatctatctttcacctatg |
240 |
Q |
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| T |
1028781 |
tggcaaacatctatctttcacctatg |
1028806 |
T |
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