View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_68 (Length: 240)
Name: NF4402_low_68
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9567607 - 9567387
Alignment:
| Q |
1 |
tttgagttcaatagtgttaaaatgtatggatgtgaggttcaactggaagattttgaagttcaacatgatgaagttcttgttgtgaattttccttttgctt |
100 |
Q |
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| T |
9567607 |
tttgagttcaatagtgttaaaatgtatggatgtgaggttcaactggaagattttgaagttcaacatgatgaagttcttgttgtgaattttccttttgctt |
9567508 |
T |
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| Q |
101 |
tgcatcacataccggacgagagcgtgagcatggagaatcatagagacaggcttttgagactggtgaagattttgtcgcctaaggtcgtgttatttgtgga |
200 |
Q |
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| T |
9567507 |
tgcatcacataccggacgagagcgtgagcatggagaatcatagagacaggcttttgagactggtgaagattttgtcgcctaaggtcgtgttatttgtgga |
9567408 |
T |
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| Q |
201 |
gcaggagtcaaacacaaacac |
221 |
Q |
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| T |
9567407 |
gcaggagtcaaacacaaacac |
9567387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 55913369 - 55913269
Alignment:
| Q |
85 |
aattttccttttgctttgcatcacataccggacgagagcgtgagcatggagaatcatagagacaggcttttgagactggtgaagattttgtcgcctaagg |
184 |
Q |
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| T |
55913369 |
aattttccctttagtttgcaccatatgccggatgaaagtgtaagcatagagaatcatagagacagattgttgagattggttaagagtttgtcgccaaagg |
55913270 |
T |
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| Q |
185 |
t |
185 |
Q |
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| T |
55913269 |
t |
55913269 |
T |
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