View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_72 (Length: 236)
Name: NF4402_low_72
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15240327 - 15240108
Alignment:
| Q |
1 |
aagcagggtaaatctaaaaaatatggtgactagatcaagaagcaaccctagaaaagtatgagcaactatgttcgtttgtcgttgaataaacttcacttcg |
100 |
Q |
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| T |
15240327 |
aagcggggtaaatctaaaaaatatggtgactacaccaagaagcaatcctagaaaggtatgaacaaccatgttcgtttgtcgttaaataaacttcacttca |
15240228 |
T |
|
| Q |
101 |
aagctagaatgtaacggcaactgagaaataatacatgaaactatgacattaaattgagagatttgcttccaatatacgtgttttttaaatttttgaaaaa |
200 |
Q |
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| T |
15240227 |
aaactagaatgtaaaggcaactaagaaataataaatgaaactatgacattaaattgagagatttgcttccaatatacgtgt-ttttaaatttttgaaaaa |
15240129 |
T |
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| Q |
201 |
agcttacacacaaacataatt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15240128 |
agcttacacacaaacataatt |
15240108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 36445444 - 36445505
Alignment:
| Q |
53 |
aaagtatgagcaactatgttcgtttgtcgttgaataaacttcacttcgaagctagaatgtaa |
114 |
Q |
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| T |
36445444 |
aaagaatgagcaactatgttcgtttgttgtttaataaacttcacctcgaagttggaatgtaa |
36445505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 27747610 - 27747691
Alignment:
| Q |
53 |
aaagtatgagcaactatgttcgtttgtcgttgaataaacttcacttcgaagctagaatgtaacggcaactgagaaataatac |
134 |
Q |
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| T |
27747610 |
aaagtatgagcaactatgttcgcttgtctcttaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatac |
27747691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 11870526 - 11870445
Alignment:
| Q |
53 |
aaagtatgagcaactatgttcgtttgtcgttgaataaacttcacttcgaagctagaatgtaacggcaactgagaaataatac |
134 |
Q |
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|||||||||||||| ||||||| ||||| || ||||||||| |||||| |||||||||| | |||||| ||||||||| |
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| T |
11870526 |
aaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttagaatgtaaagataactgataaataatac |
11870445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 29200880 - 29200961
Alignment:
| Q |
53 |
aaagtatgagcaactatgttcgtttgtcgttgaataaacttcacttcgaagctagaatgtaacggcaactgagaaataatac |
134 |
Q |
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|||||||||||||| ||||||||||||| || ||||||||| |||||| | |||||||| | |||||| ||||||||| |
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| T |
29200880 |
aaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatac |
29200961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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