View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_74 (Length: 235)
Name: NF4402_low_74
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_74 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 18977594 - 18977373
Alignment:
| Q |
14 |
atagcaacttgtggttttcagtacaccgataattggcagccaactctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18977594 |
atagcaacttgtggttttcagtacaccgataattggcagccaactctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttat |
18977495 |
T |
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| Q |
114 |
ctattatgcatccatatctgcaattgctttttcattaatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18977494 |
ctattatgcatccatatctgcaattgctttttcattcatgtatattttccacgccttgaatcccaacaatcgaagaaaaacataaaaatatacaattaga |
18977395 |
T |
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| Q |
214 |
tttcaattgatttagtaaattt |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
18977394 |
tttcaattgatttagtaaattt |
18977373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 24934421 - 24934200
Alignment:
| Q |
14 |
atagcaacttgtggttttcagtacaccgataattggcagccaactctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttat |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24934421 |
atagcaacttgtggttttcagtacactgataattggcagccagctctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttat |
24934322 |
T |
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| Q |
114 |
ctattatgcatccatatctgcaattgctttttcattaatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattaga |
213 |
Q |
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| T |
24934321 |
ctattatgcatccatatctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattaga |
24934222 |
T |
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| Q |
214 |
tttcaattgatttagtaaattt |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
24934221 |
tttcaattgatttagtaaattt |
24934200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 9365951 - 9366170
Alignment:
| Q |
16 |
agcaacttgtggttttcagtacaccgataattggcagccaactctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttatct |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9365951 |
agcaacttgtggttttcagcacaccgataattggcagccagctctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttatct |
9366050 |
T |
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| Q |
116 |
attatgcatccatatctgcaattgctttttcattaatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattagatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9366051 |
attatgcatccatatctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattagatt |
9366150 |
T |
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| Q |
216 |
tcaattgatttagtaaattt |
235 |
Q |
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|||||||||||||||||||| |
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| T |
9366151 |
tcaattgatttagtaaattt |
9366170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 11349068 - 11349215
Alignment:
| Q |
88 |
accaaatctataacttttgattttatctattatgcatccatatctgcaattgctttttcattaatgtatattttccacgccttaaatcccaacaatcgaa |
187 |
Q |
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|||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| || |
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| T |
11349068 |
accaaacccataacttttgattttatcaattatgcatccagatctgcaattgctttttcaattatgtatattttccacgcctaaaatcccaacaatcaaa |
11349167 |
T |
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| Q |
188 |
gaaaaacataaaaatatacaattagatttcaattgatttagtaaattt |
235 |
Q |
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| T |
11349168 |
gaaaaacataaaaatatacaaatagatttcaatcgatttagtaaattt |
11349215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 23028667 - 23028518
Alignment:
| Q |
58 |
tctatttaatttgaagggatttttcatttaaccaaatctataacttttgattttatctattatgcatccatat-ctgcaattgctttttcat-ta---at |
152 |
Q |
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|||| ||| ||||| ||| ||||||||||||||| | | | |||||||||||||||||||| |||||||| || || ||||||||||| || || || |
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| T |
23028667 |
tctacttagtttgatgggttttttcatttaaccagaaccacaacttttgattttatctattctgcatccagatcctctaattgcttttttatatatgtat |
23028568 |
T |
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| Q |
153 |
gtatattttccacgccttaaatcccaacaatcgaag-aaaaacataaaaa |
201 |
Q |
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|||||||||||| ||| |||| || |||||| ||| ||||||||||||| |
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| T |
23028567 |
gtatattttccaaacctaaaattcctacaatctaagcaaaaacataaaaa |
23028518 |
T |
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