View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_75 (Length: 234)
Name: NF4402_low_75
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 41958836 - 41959037
Alignment:
| Q |
19 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaacagaggaggaaattaaggagatgttgatcataattat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41958836 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttgatcataattat |
41958935 |
T |
|
| Q |
119 |
aatgagacaagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcctctgtagtata |
218 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41958936 |
aatgagacaggtaattgaatactgtaatcaaaattgtaattgaacaaaggaagacttggtagagaattgatgaggaacattaattggcctctgtagtata |
41959035 |
T |
|
| Q |
219 |
at |
220 |
Q |
| |
|
|| |
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|
| T |
41959036 |
at |
41959037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 40841918 - 40842013
Alignment:
| Q |
19 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaacagaggaggaaattaaggagatgttgatcataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
40841918 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttgattataa |
40842013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 40842111 - 40842213
Alignment:
| Q |
116 |
tataatgagacaagtaattgaatactgtaaa--------caaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcc |
207 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842111 |
tataatgagacaagtaattgaatactataaatctataatcaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcc |
40842210 |
T |
|
| Q |
208 |
tct |
210 |
Q |
| |
|
||| |
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|
| T |
40842211 |
tct |
40842213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 9993081 - 9992889
Alignment:
| Q |
26 |
atttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaacagaggaggaaattaaggagatgttgatcataattataatgaga |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9993081 |
atttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttgattataattataatgaga |
9992982 |
T |
|
| Q |
126 |
caagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcctctgtagtata |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992981 |
caagtaattgaatactgtaatcaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcctctgtagtata |
9992889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 29587310 - 29587110
Alignment:
| Q |
19 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaacagaggaggaaattaaggagatgttgatcataattat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
29587310 |
gtagagtatttgaacctataagtggcatgtgggtcaccatgagaaaataggggtcgagggaaaaagaggaggaaattaaggagaagttgatcataattat |
29587211 |
T |
|
| Q |
119 |
aatgagacaagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcctctgtagtata |
218 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29587210 |
aatgagacaagtaattgaatattgtaatcaaaattgtaattgaacaaaggaagactt-gtagagaattgataaggaacattaattggcctctgtagtata |
29587112 |
T |
|
| Q |
219 |
at |
220 |
Q |
| |
|
|| |
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|
| T |
29587111 |
at |
29587110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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