View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_77 (Length: 232)
Name: NF4402_low_77
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 13847662 - 13847854
Alignment:
| Q |
15 |
atcaacaaagtaaacagttccatccttgctaaccccagaagcacggtcttgcatgctgatccttcttgttgttggaccataaaacttgtctattaaagca |
114 |
Q |
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| T |
13847662 |
atcaacaaagtaaacagttccatccttgctaaccccagaagcacggtcttgcatgctgatccttcttgt---tggaccataaaacttgtctattaaagca |
13847758 |
T |
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| Q |
115 |
aacccttctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaaatat |
210 |
Q |
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| T |
13847759 |
aacccttctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaaatat |
13847854 |
T |
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Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 13836401 - 13836584
Alignment:
| Q |
17 |
caacaaagtaaacagttccatccttgctaaccccagaagcacggtcttgcatgctgatccttcttgttgttggaccataaaacttgtctattaaagcaaa |
116 |
Q |
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| T |
13836401 |
caacaaagtaaacagttccatccttagtagccccatatgcaaggtcttccatgc---tccttc---ttgttggaccatagaacttgtctattaaagcaaa |
13836494 |
T |
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| Q |
117 |
cccttctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaa |
206 |
Q |
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| T |
13836495 |
cccttctaagccaattttccttaggtctgatgaaggaggtgccattgatgctaaatgttggagctgaagtaaatgtttctattctatcaa |
13836584 |
T |
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