View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_8 (Length: 727)

Name: NF4402_low_8
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_8
NF4402_low_8
[»] chr4 (6 HSPs)
chr4 (178-719)||(21614527-21615076)
chr4 (1-140)||(21615116-21615255)
chr4 (375-482)||(5820175-5820282)
chr4 (574-698)||(34855874-34856005)
chr4 (400-559)||(5693235-5693396)
chr4 (639-693)||(48961947-48962001)
[»] chr8 (3 HSPs)
chr8 (348-640)||(12104792-12105087)
chr8 (389-511)||(3663658-3663782)
chr8 (574-681)||(27805858-27805973)
[»] chr5 (6 HSPs)
chr5 (346-586)||(18018707-18018948)
chr5 (572-701)||(31375364-31375501)
chr5 (576-701)||(20473829-20473962)
chr5 (639-711)||(22035676-22035748)
chr5 (639-711)||(22038902-22038974)
chr5 (546-711)||(43104120-43104292)
[»] chr3 (7 HSPs)
chr3 (392-516)||(7555511-7555637)
chr3 (406-586)||(26272622-26272805)
chr3 (528-711)||(23048678-23048867)
chr3 (639-711)||(10558267-10558339)
chr3 (639-711)||(28716987-28717059)
chr3 (572-701)||(17545043-17545179)
chr3 (407-484)||(18536585-18536662)
[»] chr1 (10 HSPs)
chr1 (389-526)||(14961355-14961494)
chr1 (392-586)||(17336652-17336849)
chr1 (499-586)||(42591167-42591254)
chr1 (639-711)||(14159522-14159594)
chr1 (639-711)||(28139069-28139141)
chr1 (639-711)||(28142320-28142392)
chr1 (572-701)||(8434896-8435034)
chr1 (574-706)||(25663317-25663457)
chr1 (573-717)||(26639746-26639898)
chr1 (639-706)||(1941557-1941624)
[»] chr2 (5 HSPs)
chr2 (441-562)||(23258532-23258655)
chr2 (574-701)||(3252067-3252202)
chr2 (639-711)||(35076731-35076803)
chr2 (639-711)||(35079989-35080061)
chr2 (639-706)||(6277390-6277457)
[»] chr7 (7 HSPs)
chr7 (573-711)||(7570088-7570234)
chr7 (573-711)||(7576503-7576649)
chr7 (572-706)||(18970818-18970960)
chr7 (639-711)||(1633912-1633984)
chr7 (639-711)||(1637157-1637229)
chr7 (639-711)||(44673252-44673324)
chr7 (572-641)||(18974057-18974126)
[»] chr6 (2 HSPs)
chr6 (576-701)||(11184297-11184430)
chr6 (639-693)||(27315696-27315750)


Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 178 - 719
Target Start/End: Complemental strand, 21615076 - 21614527
Alignment:
Q  178 atgagttcataggtgctagaggctaaaaaaggacagaaaaataatgttgtggaagagaaaaatcgggccacgattttggaggagcgtctgattgatgatg 277  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21615076 atgagttcataggtgctagaggttaaaaaaggacagaaaaataatgttgaggaagagaaaaatcgggccacgattttggaggagcgtctgattgatgatg 21614977  T
Q  278 cagttaatgcaaaatcgggtcacgatttcttcaaatcgggccatgattttgacgtcacagaattaaaatctataaaagccgaacacgtttctgaaaaaag 377  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  21614976 cagttaatgcaaaatcggatcacgatttcttcaaatcgggccacgattttgacgtcacagaattaaaatctataaaagccaaacacgtttatgaaaaaag 21614877  T
Q  378 ggttcggcttcttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgta 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21614876 ggttcggcttcttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggtttgccatccaactcatagtgagtcccaaattcatgta 21614777  T
Q  478 atgttgttttcttttaatagttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagcttttttgccatgt 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21614776 atgttgttttcttttaatagttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagattattttgttctagcttttttgccatgt 21614677  T
Q  578 aatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcg--------taatgattctgacccgatataattgagcttaga 669  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||        | |||||||||||||||||||||||||||||||    
T  21614676 aatatgtaactctgaattattatgattgttattctagtttattcagtataaattgtgcgtgatgattttatgattctgacccgatataattgagcttaga 21614577  T
Q  670 gtttatatgactactgacactagcttataactttgacctattgatgatgt 719  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21614576 gtttatatgactactgacactagcttataactttgacctatttatgatgt 21614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 21615255 - 21615116
Alignment:
Q  1 ttgcaaacgtgtgtcgttatatgaagcatctttgtatgatagcccaaattgttcgatccatttctcatgtttatttgatgaggaaggagaagggttcaag 100  Q
    |||||||||| | ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21615255 ttgcaaacgtttttcgttatctgcagcatctttgtatgatatcccaaattgttcgatccatttctcatgtttatttgatgaggaaggagaagggttcaag 21615156  T
Q  101 gacactactaggtcttatgatgacactaggtcatatcatc 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21615155 gacactactaggtcttatgatgacactaggtcatatcatc 21615116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 482
Target Start/End: Original strand, 5820175 - 5820282
Alignment:
Q  375 aagggttcggcttcttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcat 474  Q
    ||||||| || || ||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  5820175 aagggtttggttttttgggagattgaagacacatttgaaactaaggattgcagatttcgtggtggcttgtcatccaactcatagtcagtcccaaattcat 5820274  T
Q  475 gtaatgtt 482  Q
     |||||||    
T  5820275 ataatgtt 5820282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 698
Target Start/End: Complemental strand, 34856005 - 34855874
Alignment:
Q  574 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatgattct-------gacccgatataattgagctt 666  Q
    |||||||||||||||||||||||| |||| |||||||   |||||||||| ||||||| ||||||||| || |       ||||| ||| |||||| |||    
T  34856005 atgtaatatgtaactctgaattatcatgaatgttatttcagtttattcagtataaattatgcgtaatgcttttatgattcgacccaataaaattgatctt 34855906  T
Q  667 agagtttatatgactactgacactagcttata 698  Q
    |||| ||| ||||||| |||||| ||||||||    
T  34855905 agagattacatgactaatgacaccagcttata 34855874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 5693235 - 5693396
Alignment:
Q  400 aagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttcttttaa--tag 497  Q
    |||||||||||||||| ||| ||||| || || ||||| || |||||||||| ||||||| || ||  | ||||||||||||||| ||  |||||  |      
T  5693235 aagacacatttggagctaagcattgcggaatttgtggtcgcatgccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctga 5693334  T
Q  498 ttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgtt 559  Q
    |||||||||| |||||||| | ||||||| |||    | ||||||||| | |||||||||||    
T  5693335 ttatttgtgctttagccatgagtagctaaatttttcgtgattaggtctaatatgattttgtt 5693396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 693
Target Start/End: Complemental strand, 48962001 - 48961947
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagc 693  Q
    ||||||||||||| ||||||||||    ||||||||||||||||||||| |||||    
T  48962001 atgattctgacccaatataattgattcaagagtttatatgactactgacgctagc 48961947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 348 - 640
Target Start/End: Complemental strand, 12105087 - 12104792
Alignment:
Q  348 tataaaagccgaacacgtttctgaaaaaagggttcggcttcttggg-agattgaagacacatttggagccaaggattgcagatttcgtggtggcttgcca 446  Q
    |||||||||| ||||||||| ||||  |||||||| | || ||||| |||||| |||||||||||||  |||||| |||| ||||| ||||||||| |||    
T  12105087 tataaaagccaaacacgtttatgaagcaagggttctgatttttggggagattggagacacatttggattcaaggactgcaaatttcatggtggcttacca 12104988  T
Q  447 tccaactcatagtgagtcccaaattcatgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtc 544  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| | |||||||||||||||| ||||||||    
T  12104987 tccaactcatagccagtcccaaattcatgtaatgttgttttcttttaatctagttatttgtgcattagtcatgagtagctaagtttcaattgattaggtc 12104888  T
Q  545 tgagatgattttgttctagcttttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaat 640  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  12104887 tgagatgattctgttctagctttttggccatgtaatttgtaactctgaattattatgattgttattctagtttattcaatataaattgtgcgtaat 12104792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 3663782 - 3663658
Alignment:
Q  389 ttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttc 488  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  3663782 ttgggatattgaagacacatttgaagctaaggattgcagattttgtggtggcttgccattcaactcatagtcaatcccaaattcatgtaatgttgttttc 3663683  T
Q  489 tttt--aatagttatttgtgcatta 511  Q
    ||||  | |||||||||||||||||    
T  3663682 ttttacattagttatttgtgcatta 3663658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 574 - 681
Target Start/End: Complemental strand, 27805973 - 27805858
Alignment:
Q  574 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagct 665  Q
    ||||||| | |||||||||||||| |||| ||||||||| | |||||||| ||||||||||||||        |||||||||| || |||||||||| ||    
T  27805973 atgtaatctataactctgaattatcatgaatgttattctaggttattcagtataaattgtgcgtaatgcttttatgattctgatccaatataattgatct 27805874  T
Q  666 tagagtttatatgact 681  Q
    ||||| ||||||||||    
T  27805873 tagagattatatgact 27805858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 9e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 346 - 586
Target Start/End: Original strand, 18018707 - 18018948
Alignment:
Q  346 tctataaaagccgaacacgtttctgaaaaaagggttcggcttcttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgcc 445  Q
    ||||||||||||  |||||||||||||  ||||||||    | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18018707 tctataaaagccatacacgtttctgaagcaagggttctaggttttgggagattgaagacacatttggagccgaggattgcagatttcgtggtgacttgcc 18018806  T
Q  446 atccaactcatagtgagtcccaaattcatgtaatgttgttttcttttaa--tagttatttgtgcattagccatcaatagctaagtttcaatttattaggt 543  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||  || ||||||||||||||||||| | |||||||||||||||| |||||||    
T  18018807 atccaactcatagtcagt-ccaaattcaagtaatgttgttttcttttaatctatttatttgtgcattagccatgagtagctaagtttcaattgattaggt 18018905  T
Q  544 ctgagatgattttgttctagcttttttgccatgtaatatgtaa 586  Q
    || |||||||| | ||||||||||||  | || ||||||||||    
T  18018906 ctaagatgattatattctagctttttgtctatataatatgtaa 18018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 31375364 - 31375501
Alignment:
Q  572 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgag 663  Q
    ||||||||| |||| ||||||||||||||||  |||||||| | ||||| || ||||||||||||||        |||||||||||||  |||||||||     
T  31375364 ccatgtaatctgtagctctgaattattatgaaagttattctaggttatttagtataaattgtgcgtaatgcttttatgattctgacccattataattgat 31375463  T
Q  664 cttagagtttatatgactactgacactagcttataact 701  Q
    ||||||| ||||| |||| ||||||| |||||||||||    
T  31375464 cttagagattataggactgctgacaccagcttataact 31375501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 701
Target Start/End: Complemental strand, 20473962 - 20473829
Alignment:
Q  576 gtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagctta 667  Q
    ||||| |||| ||||||||||||||||  |||||||| |||||||||| |||||||||| |||        ||||||||||| | |||||||||  ||||    
T  20473962 gtaatctgtagctctgaattattatgaaagttattctagtttattcagtataaattgtgtgtaatgcttttatgattctgactcaatataattgttctta 20473863  T
Q  668 gagtttatatgactactgacactagcttataact 701  Q
    ||| || ||||||| ||||||| |||||||||||    
T  20473862 gagattgtatgactgctgacaccagcttataact 20473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Original strand, 22035676 - 22035748
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  22035676 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 22035748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Original strand, 22038902 - 22038974
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  22038902 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 22038974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 711
Target Start/End: Complemental strand, 43104292 - 43104120
Alignment:
Q  546 gagatgattttgttctagct--tttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg-- 641  Q
    ||||||||||||||||||||  | |||   ||||||  ||||||||| |||  |||||| ||| ||||| |||||||||| ||||||||| | |||||      
T  43104292 gagatgattttgttctagctcatgttt---atgtaacctgtaactcttaatctttatgaatgtcattctagtttattcagtataaattgttcttaatgct 43104196  T
Q  642 ------attctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
          ||| |||||| ||||||||||  ||||||| |||||||| |||||||||||| || |||| |||| ||||    
T  43104195 tttatgattttgacccaatataattgattttagagtatatatgaccactgacactagcgtaaaactctgacatatt 43104120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 392 - 516
Target Start/End: Complemental strand, 7555637 - 7555511
Alignment:
Q  392 ggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttcttt 491  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  7555637 ggagattgaagacgcatttggagccgaggattgcagatttcgtagtgccttgtcatccaactcaaagtcagtcccaagttcatgtaatgttgttttcttt 7555538  T
Q  492 taa--tagttatttgtgcattagccat 516  Q
    |||  ||||||||||||||||| ||||    
T  7555537 taatttagttatttgtgcattatccat 7555511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 406 - 586
Target Start/End: Original strand, 26272622 - 26272805
Alignment:
Q  406 catttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttcttttaa--tagttattt 503  Q
    ||||||||||  |||||||||||||| ||||||| || |||||||||||||||| | ||||||||||||| ||||||||||||||||||  |||||||||    
T  26272622 catttggagcagaggattgcagattttgtggtggttttccatccaactcatagtcaatcccaaattcatgcaatgttgttttcttttaatttagttattt 26272721  T
Q  504 gtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagcttttttgcc-atgtaatatgtaa 586  Q
    |||||||| |||| | ||||||| |||   || ||||| ||| |||||| |||||||||  |||||| || |||||||||||||    
T  26272722 gtgcattaaccatgagtagctaaattttctttgattagatcttagatgaatttgttctaagttttttaccaatgtaatatgtaa 26272805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 528 - 711
Target Start/End: Original strand, 23048678 - 23048867
Alignment:
Q  528 tttcaatttattaggtctgagatgattttgttctagcttttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcata 627  Q
    |||| ||| ||||||||  |||||||||||||||||||  |   | ||||||| |||||||||||||||| |||| ||||||||  ||| |||||| |||    
T  23048678 tttctattgattaggtcatagatgattttgttctagctcatga-ctatgtaatctgtaactctgaattatcatgaatgttattcaggtt-attcagtata 23048775  T
Q  628 aattgtgcgtaatg--------attctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||||        |||||||||| |||||||||| ||||||| || ||||||| ||||||| ||||||||||| |||| ||||    
T  23048776 aattgtgcgtaatgcttttatgattctgacccaatataattgatcttagagattgtatgactgctgacaccagcttataactctgacatatt 23048867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 10558339 - 10558267
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    |||||| |||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  10558339 atgattatgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 10558267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 28717059 - 28716987
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    |||||||| |||| ||||||||||   ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  28717059 atgattctaacccaatataattgattctagagattatatgactattgacaccagcttataactttgacttatt 28716987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 701
Target Start/End: Complemental strand, 17545179 - 17545043
Alignment:
Q  572 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgag 663  Q
    |||| |||| |||| ||||||||||||||||  |||||||| | |||||||| |||||||||| |||        |||||| |||||| ||||||||||     
T  17545179 ccatttaatctgtagctctgaattattatgaaagttattctag-ttattcagtataaattgtgtgtaatgcttttatgattatgacccaatataattgat 17545081  T
Q  664 cttagagtttatatgactactgacactagcttataact 701  Q
     |||||| ||||| ||||  |||||| |||||||||||    
T  17545080 tttagagattataggactgttgacaccagcttataact 17545043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 18536585 - 18536662
Alignment:
Q  407 atttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgt 484  Q
    ||||||||| |||| ||||||| || |||||||| | |||||||| ||||||| || ||  | |||||||||||||||    
T  18536585 atttggagctaagggttgcagaatttgtggtggcataccatccaagtcatagttagaccatatttcatgtaatgttgt 18536662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 389 - 526
Target Start/End: Original strand, 14961355 - 14961494
Alignment:
Q  389 ttgggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttc 488  Q
    |||| |||||||||||||||||| |||  |||||||||||||| |||||||||| |||||||||||| | | ||||  || |||||||||||||||||||    
T  14961355 ttggtagattgaagacacatttgaagcttaggattgcagattttgtggtggcttcccatccaactcaaattcagtcttaatttcatgtaatgttgttttc 14961454  T
Q  489 tttt--aatagttatttgtgcattagccatcaatagctaa 526  Q
    ||||  | |||||||||||||||||||||| | |||||||    
T  14961455 ttttacattagttatttgtgcattagccatgactagctaa 14961494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 392 - 586
Target Start/End: Original strand, 17336652 - 17336849
Alignment:
Q  392 ggagattgaagacacatttggagccaaggattgcagatttcgtggtggcttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttcttt 491  Q
    |||||||||||||||||||||||   |||||| || |||| |||||||||||| ||  ||| |||| | ||| | ||| |||||||||| ||||||||||    
T  17336652 ggagattgaagacacatttggagttgaggattacatattttgtggtggcttgctatttaacacataatcagttcaaaactcatgtaatgctgttttcttt 17336751  T
Q  492 taa--tagttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttct-agcttttttgccatgtaatatgtaa 586  Q
    |||  |||||||||||||||||||| | | ||| |||||||  ||| |||| ||||  ||||| |||||||| |||||||   | |||||||||||||    
T  17336752 taatctagttatttgtgcattagccttgagtagttaagttttcattgattaagtcttggatgaatttgttctaagcttttgaccaatgtaatatgtaa 17336849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 499 - 586
Target Start/End: Complemental strand, 42591254 - 42591167
Alignment:
Q  499 tatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagcttttttgccatgtaatatgtaa 586  Q
    |||||||||||||||||  | |||||||||||||||| |||  ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  42591254 tatttgtgcattagccacgagtagctaagtttcaattgattgagtctgagatgattctgttctagttttttggccatgtaatttgtaa 42591167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 14159594 - 14159522
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| |||||| |||  ||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  14159594 atgattctgacccaatataactgattttagagtatatatgactactgacactagcgtataactctgacatatt 14159522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 28139141 - 28139069
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  28139141 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 28139069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 28142392 - 28142320
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  28142392 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 28142320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 8434896 - 8435034
Alignment:
Q  572 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccga-tataattga 662  Q
    ||||||||| |||| ||||||||||||||||  |||||| | |||||||||| ||| |||| | ||||||        |||||||||| | |||||||||    
T  8434896 ccatgtaatgtgtagctctgaattattatgaaagttattatagtttattcagtatagattgcgtgtaatgcttttatgattctgaccccaatataattga 8434995  T
Q  663 gcttagagtttatatgactactgacactagcttataact 701  Q
     ||||||| ||||| |||| ||||||| |||||||||||    
T  8434996 tcttagagattataggactgctgacaccagcttataact 8435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 706
Target Start/End: Complemental strand, 25663457 - 25663317
Alignment:
Q  574 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatgatt--------ctgacccgatataattgagct 665  Q
    |||||| |||||||||| |||  |||||| ||| ||||| |||||||||| ||||||||| | ||||| ||        ||||||| |||||| |||  |    
T  25663457 atgtaacatgtaactcttaatctttatgaatgtcattctagtttattcagtataaattgttcttaatgcttttatgtttctgacccaatataaatgattt 25663358  T
Q  666 tagagtttatatgactactgacactagcttataactttgac 706  Q
    |||||| ||||||||||||||||||||| | ||||| ||||    
T  25663357 tagagtatatatgactactgacactagcgtgtaactctgac 25663317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 717
Target Start/End: Complemental strand, 26639898 - 26639746
Alignment:
Q  573 catgtaatatgtaactctgaa-ttattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgag 663  Q
    |||||||||||||||||| || |||||||||||  |||||| |||||||  | ||||||||||| |||||        ||||||| || ||| ||||||     
T  26639898 catgtaatatgtaactctaaaattattatgattactattctagtttattt-gtataaattgtgcctaatgcttttatgattctgaaccaatacaattgaa 26639800  T
Q  664 cttagagtttatatgactactgacactagcttataactttgacctattgatgat 717  Q
    |||| || |||||||| | ||||||| | ||||||||||||| ||||| |||||    
T  26639799 cttatagattatatgattgctgacaccaacttataactttgatctatttatgat 26639746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 706
Target Start/End: Original strand, 1941557 - 1941624
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgac 706  Q
    ||||||| ||||| ||||||||||    ||||||||||||||||||||||||||| | ||||| ||||    
T  1941557 atgattcggacccaatataattgattcaagagtttatatgactactgacactagcatgtaactctgac 1941624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 562
Target Start/End: Original strand, 23258532 - 23258655
Alignment:
Q  441 ttgccatccaactcatagtgagtcccaaattcatgtaatgttgttttcttttaa--tagttatttgtgcattagccatcaatagctaagtttcaatttat 538  Q
    |||||||| ||||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||| | ||||| |  ||||||| ||    
T  23258532 ttgccatctaactcatagtcggtcccaaatttatgtaatgttgttttcttttaatctagttatttgtggattagccatgagtagcttaacttcaattgat 23258631  T
Q  539 taggtctgagatgattttgttcta 562  Q
    ||||||| ||||| || |||||||    
T  23258632 taggtctcagatgtttatgttcta 23258655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 574 - 701
Target Start/End: Original strand, 3252067 - 3252202
Alignment:
Q  574 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagct 665  Q
    ||||||| |||||||||||||||| |||| ||||||||  | ||||| || |||||||||||||||||        ||||||| || |||||||||| ||    
T  3252067 atgtaatctgtaactctgaattatcatgaatgttattccaggttattaagtataaattgtgcgtaatgcttttatgattctgatccaatataattgatct 3252166  T
Q  666 tagagtttatatgactactgacactagcttataact 701  Q
    ||||| |||||||||| ||||||| |||||||||||    
T  3252167 tagagattatatgactgctgacaccagcttataact 3252202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Original strand, 35076731 - 35076803
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  35076731 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 35076803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Original strand, 35079989 - 35080061
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  35079989 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 35080061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 706
Target Start/End: Complemental strand, 6277457 - 6277390
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgac 706  Q
    ||||||||||||| ||||||||||    ||||||||||||||||||||||||||| | ||||| ||||    
T  6277457 atgattctgacccaatataattgattcaagagtttatatgactactgacactagcgtgtaactctgac 6277390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 711
Target Start/End: Original strand, 7570088 - 7570234
Alignment:
Q  573 catgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagc 664  Q
    |||||||||||||||||| ||||||||||| |||||||    ||||||||| ||||||| || ||||||        |||||||||| |||||||||| |    
T  7570088 catgtaatatgtaactctaaattattatgaatgttatttcattttattcagtataaattatgtgtaatgcttttatgattctgacccaatataattgatc 7570187  T
Q  665 ttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    |||||| ||||| ||||  |||||| |||||||||||  ||||||||    
T  7570188 ttagagattataggactgttgacaccagcttataactcagacctatt 7570234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 711
Target Start/End: Original strand, 7576503 - 7576649
Alignment:
Q  573 catgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagc 664  Q
    |||||||||||||||||| ||||||||||| |||||||    ||||||||| ||||||| || ||||||        |||||||||| |||||||||| |    
T  7576503 catgtaatatgtaactctaaattattatgaatgttatttcattttattcagtataaattatgtgtaatgcttttatgattctgacccaatataattgatc 7576602  T
Q  665 ttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    |||||| ||||| ||||  |||||| |||||||||||  ||||||||    
T  7576603 ttagagattataggactgttgacaccagcttataactcagacctatt 7576649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 706
Target Start/End: Complemental strand, 18970960 - 18970818
Alignment:
Q  572 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgag 663  Q
    ||||||||| |||| |||||||| |||||||  |||||||| |||||||||  |||||||||| ||||||        |||||||||| ||||||||||     
T  18970960 ccatgtaatctgtagctctgaatcattatgaaagttattctagtttattcaatataaattgtgtgtaatgcttttatgattctgacccaatataattgat 18970861  T
Q  664 cttagagtttatatgactactgacactagcttataactttgac 706  Q
     |||||| || ||||||| || |||| ||||||||||| ||||    
T  18970860 attagagattgtatgactgctaacaccagcttataactctgac 18970818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 1633984 - 1633912
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  1633984 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 1633912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 1637229 - 1637157
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  1637229 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 1637157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 44673324 - 44673252
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 711  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||| ||||||||| | ||||| |||| ||||    
T  44673324 atgattctgacccaatataattgattttagagtatatatgactaccgacactagcgtttaactctgacatatt 44673252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 641
Target Start/End: Complemental strand, 18974126 - 18974057
Alignment:
Q  572 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg 641  Q
    ||||||||| |||| ||||||||||||||||  ||||| || ||||||| |  |||||||||||||||||    
T  18974126 ccatgtaatctgtagctctgaattattatgaaagttatcctagtttatttaatataaattgtgcgtaatg 18974057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 576 - 701
Target Start/End: Complemental strand, 11184430 - 11184297
Alignment:
Q  576 gtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagctta 667  Q
    ||||| |||| ||||||||||||||||  |||||||| |||||||| | |||||||||| |||        ||||||||||| | ||||||||||  |||    
T  11184430 gtaatctgtagctctgaattattatgaaagttattctagtttattcggtataaattgtgtgtaatgcttttatgattctgactcaatataattgatatta 11184331  T
Q  668 gagtttatatgactactgacactagcttataact 701  Q
    ||| ||||| |||| ||||||| |||||||||||    
T  11184330 gagattataggactgctgacaccagcttataact 11184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 693
Target Start/End: Original strand, 27315696 - 27315750
Alignment:
Q  639 atgattctgacccgatataattgagcttagagtttatatgactactgacactagc 693  Q
    ||||||||||||| ||||||||||    |||||||||||||||||||| ||||||    
T  27315696 atgattctgacccaatataattgattcaagagtttatatgactactgaaactagc 27315750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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