View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_low_86 (Length: 211)
Name: NF4402_low_86
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_86 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 38041115 - 38040943
Alignment:
| Q |
20 |
cagcatgttataaaagacatgataatggnnnnnnnncaaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
38041115 |
cagcatgttataaaagacatgataatggttttttttcaaagcaaaagagattaatattaattttttttcataggagattaatactattaaaactttgttt |
38041016 |
T |
|
| Q |
120 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38041015 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactaca |
38040943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 31841533 - 31841358
Alignment:
| Q |
21 |
agcatgttataaaagacatgataatggnnnnnnnn--caaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31841533 |
agcatgttataaaagacatgataatggttttttttttcaaagcaaaagagattaatattaagtttttt-cagaggagattaatattattaaaactttgtt |
31841435 |
T |
|
| Q |
119 |
tgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacatgaactaca |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||| |
|
|
| T |
31841434 |
tgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctaca |
31841358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 31837432 - 31837325
Alignment:
| Q |
88 |
cagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacat |
184 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
31837432 |
cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacat |
31837333 |
T |
|
| Q |
185 |
gaactaca |
192 |
Q |
| |
|
|| ||||| |
|
|
| T |
31837332 |
gagctaca |
31837325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University