View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_9 (Length: 595)
Name: NF4402_low_9
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 39894530 - 39895120
Alignment:
| Q |
1 |
ttgtttcctttgattttatattctattccacaatttgtgtaggcttgaagaaaattcagtaggaaatgagaaaattatttagtaatttaggaataaataa |
100 |
Q |
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| T |
39894530 |
ttgtttcctttgattttatattctattccacaatttgtgtaggcttgaagaaaattcagtaggaaatgagaaaattatttagtaatttaggaataaataa |
39894629 |
T |
|
| Q |
101 |
atatacatagaaaagtaaaataaacatagaaagcagcttcttttgttagctttgcagtgttggactgtggaccactttaatgcttgtttgaaacaaacaa |
200 |
Q |
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| T |
39894630 |
atatacatagaaaagtaaaataaacatagaaagcagcttcttttgttagctttgcagtgttggactgtggaccactttaatgcttgtttgaaacaaacaa |
39894729 |
T |
|
| Q |
201 |
taggtagccttgtaaaaattagagtgttgaaagttaaagttaatttaaattttactttgcattaatgattgctatgagaaatttttgttgaatcaaagag |
300 |
Q |
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| T |
39894730 |
taggtagccttgtaaaaattagagtgttgaaagttaaagttaatttaaattttactttgcattaatgattgctatgagaaatttttgttgaatcaaaga- |
39894828 |
T |
|
| Q |
301 |
catgcattctacatatataaagggggtttatgaaacatgaaaacgactttaaacaaaaggaaaaaggcaatatgttcaagagtagaaaagaagtcccaaa |
400 |
Q |
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| T |
39894829 |
---gcattctacatatataaagggggtttatgaaacatgaaaacgactttaaacaaaaggaaaaaggcaatatgttcgagagtagaaaagaagtcccaaa |
39894925 |
T |
|
| Q |
401 |
ttaaaaaagtcaataacaaccta----------------tttgga-aaccaaccacctaatgatgttgatgttttgatttctttataggattagatatat |
483 |
Q |
| |
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||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894926 |
ttaaaaatgtcaataacaacctatatctctctttcacagtctggataaccaaccacctaatgatgttgatgttttgatttctttataggattagatatat |
39895025 |
T |
|
| Q |
484 |
ctaatctctactacaatttattattgttattattagtaataatataagaagcatgttatagtaatttaatttaatcctagttcctagactagtgt |
578 |
Q |
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| T |
39895026 |
ctaatctctactacaatttattattgttattattagtaataatataagaagcatgttatagtaatttaatttaatcctagttcctagactagtgt |
39895120 |
T |
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