View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403-Insertion-10 (Length: 522)
Name: NF4403-Insertion-10
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Complemental strand, 37182043 - 37181540
Alignment:
| Q |
8 |
ataatgacaacgaagttgtgaatagttatagaaggtgttagacgacaatactagtaaatacatgagcatgatagatagcgatactatgtgaggagccaga |
107 |
Q |
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| T |
37182043 |
ataatgacaacgaagttgtgaatagttatagaaggtgttagacgacaatactagtaaat------gcatgatagatagcgatactatgtgaggagccaaa |
37181950 |
T |
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| Q |
108 |
cttatctttgtaaaatggtaaaaaacgcatgtagtaacaattgaattcatgaaatagcttaatgataaagactacgaaatacctcacattgtcattatgt |
207 |
Q |
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| T |
37181949 |
cttatctttgtaaaatggtaaaaaacgcatgtagtaacaattgaattcatgaaatagcttaatgataaaaactatgaaatacctcacattgtcattatgt |
37181850 |
T |
|
| Q |
208 |
tcatttttgaaaattgaatcctctccaagactctaagtctgcagtatagtcctgtaatgaccattcagtgaaattctttttcaccatacttctcgtgcgt |
307 |
Q |
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| T |
37181849 |
tcatttttgaaaattgaatcttctccaagactctaagtctgcagtatagtcctgtaatgaccattcagtgaaattctttttcaccatacttctcgtgcgt |
37181750 |
T |
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| Q |
308 |
cccttgttttgtcgaaaatattttcgttcggattttaaaatttagagtgtgtttttcttgttcgaaatatataatctgaacgcattgtacatactatttg |
407 |
Q |
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| T |
37181749 |
cccttgttttctcgaaaatattttcgtttggattttaaaatttagagtgtgtttttcttgttcggaatatataatccgaacacattgtacatactatttg |
37181650 |
T |
|
| Q |
408 |
aatttgttctcttccaccacacttttattttatgaaattactcagtttagattatactataaatacatcaactttagttaattaatttgtctctcataaa |
507 |
Q |
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| T |
37181649 |
aatccgttctcttccaccaca-ttttattttatgaaattactctgtttagattatactataaatgcatcaactttagttaattaatttgtctctcataaa |
37181551 |
T |
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| Q |
508 |
aatgatcggag |
518 |
Q |
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| T |
37181550 |
aatgatcggag |
37181540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 33012940 - 33012981
Alignment:
| Q |
468 |
aaatacatcaactttagttaattaatttgtctctcataaaaa |
509 |
Q |
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| T |
33012940 |
aaatacatcaactttagttaatccatttgtctcttataaaaa |
33012981 |
T |
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