View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4403-Insertion-3 (Length: 857)
Name: NF4403-Insertion-3
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 277 - 787
Target Start/End: Original strand, 14745695 - 14746202
Alignment:
| Q |
277 |
ttacatggcatgggctgcatagccgctcagccacacttcggtgctataaataaaccactattcaaaacactcgaataaccaaaattaagccaattaacac |
376 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745695 |
ttacatggcatgagctacatagccgctcagccacacttcggtgctataaa----ccactattcaaaacactcgaataaccaaaattaagccaattaacac |
14745790 |
T |
|
| Q |
377 |
ctcaacaactgtctttgatttggctcaggtttatgtataccatttgatgtgatagaatcaga-gctaacctgtctgaagtctgtgtcagttcttgaatgt |
475 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14745791 |
ctcaacaaccgtctttgatttggctcaggtttatgtataccatttgatgtgatagaatcagaagctaacctgtctgaagtctgtgtcagttcttgaatgt |
14745890 |
T |
|
| Q |
476 |
aggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattactaattagaaaagtaggatac |
575 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745891 |
aggtttctgcgatgcctttaagacactgcaggtgaaaacaatatcatttagcataagatatgcattaaatttcaaattactaattagaaaagtaggatac |
14745990 |
T |
|
| Q |
576 |
catagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgttacattagagaaagtgagaaactaacaaatagaga |
675 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745991 |
catatcatatagagataaatactatcttaaactcgaccttaacatatgatgacaggcaaacttgttacattagagaaagtgagaaactaacaaatagaga |
14746090 |
T |
|
| Q |
676 |
acaaagtacaagaaagaagaacaccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatgtggctccagc |
775 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
14746091 |
acaaagtacaagaaagaagaacaccttaagttttggaattcttgaatatttagatttagagaaacaaaagcacctctctaaaaggttatgtggctccagc |
14746190 |
T |
|
| Q |
776 |
tgaatatatatt |
787 |
Q |
| |
|
|||||||||||| |
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|
| T |
14746191 |
tgaatatatatt |
14746202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 205 - 554
Target Start/End: Original strand, 14742681 - 14743038
Alignment:
| Q |
205 |
tgagtgatttagaagaacaaactactattgatcttcgacttgaacatttcaagttgcaagaaaaccagtacattacatggcatgggctgcatagccgctc |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
14742681 |
tgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaaccagtacattacatggcatgggctgcatagccactc |
14742780 |
T |
|
| Q |
305 |
agccacacttcggtgctataaataaaccactattcaaaacactcgaataaccaaaattaagccaattaacacctcaacaactgtctttgatttg------ |
398 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
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| T |
14742781 |
agccacacttcggtgct----ataaaccactattcaaaatactcgaataaccaaaattaagccaattcaaacctcaacaactgtctttgctttgtctcaa |
14742876 |
T |
|
| Q |
399 |
-gctcaggtttatgtataccatttgatgtgatagaatcag-agctaacctgtctgaagtctgtgtcag-ttcttgaatgtaggt---ttctgcgatgcct |
492 |
Q |
| |
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|||| ||||||| ||||||||||||||||| ||||| | ||||||||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| |
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| T |
14742877 |
ctctcacgtttatgcataccatttgatgtgattgaatcggaagctaacctgtctaaagtccgtgtcagtttcttgaatgtaggtttcttctgcaatgcct |
14742976 |
T |
|
| Q |
493 |
ttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaatta |
554 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
14742977 |
ttaagaccctgtaggcgaaaacaatatcatttagcataagatatgtattaaatttcaaatta |
14743038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 14745274 - 14745345
Alignment:
| Q |
147 |
gatatgcctctccctctggtatttcttcatttaaagtagatctaagcttttaggttcctgagtgatttagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745274 |
gatatgcctctccctctggtatttcttcatttaaagtagatctaagcttttaggttcctgagtgatttagaa |
14745345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 14742492 - 14742598
Alignment:
| Q |
103 |
ttaatgccaatgctagtattctcttgcaatattcatattggattgatatgcctctccctctggtatttcttcatttaaagtagatctaagcttttaggtt |
202 |
Q |
| |
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||||||||||| || || |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||| |
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| T |
14742492 |
ttaatgccaatcctggtcttctcttgcaatattcatgttggattgatatgtctctccctctagtatttcttcatttaaattagtgctaagcttttaggtt |
14742591 |
T |
|
| Q |
203 |
cctgagt |
209 |
Q |
| |
|
||||||| |
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|
| T |
14742592 |
cctgagt |
14742598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 667 - 803
Target Start/End: Original strand, 14743051 - 14743179
Alignment:
| Q |
667 |
aaatagagaacaaagtacaagaaagaagaa-caccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatg |
765 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
14743051 |
aaatagagaacaaagtacaagaaataagaaacaccttaagttttggagattttgaatatttagatttagagaaacaaaagcacctctc---------atg |
14743141 |
T |
|
| Q |
766 |
tggctccagctgaatatatatttattaagtaacatcat |
803 |
Q |
| |
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| ||||| |||||||| ||||||||||| ||||||||| |
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| T |
14743142 |
tcgctcctgctgaataaatatttattaattaacatcat |
14743179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 14745380 - 14745442
Alignment:
| Q |
209 |
tgatttagaagaacaaactactattgatcttcgacttgaacatttcaagttgcaagaaaacca |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14745380 |
tgatttagaagaacaaactactattgatcttcgacttgaacatttcaagttgcaacaaaacca |
14745442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 14282291 - 14282194
Alignment:
| Q |
217 |
aagaacaaactactattgatcttcgacttgaacatttcaagttgcaagaaaaccagtacattacatggcatgggctgcatagccgctcagccacactt |
314 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| || |||||||| |||| |||||||| |
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|
| T |
14282291 |
aagaacaaaatattattgatcttgaacttgaacatttcaggttgcaaccaaaccagtacattacatggcattggtcgcatagccactcaaccacactt |
14282194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 641
Target Start/End: Complemental strand, 14289789 - 14289623
Alignment:
| Q |
473 |
tgtaggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattactaattagaaaagtagga |
572 |
Q |
| |
|
||||| ||||| | ||| ||||||||||||| | |||||| |||||| ||||| ||| |||| |||||||||||||||| |||||| |||| |||| |
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|
| T |
14289789 |
tgtagatttctccaatgactttaagaccctgaat-tgaaaagaatatcgcttagcgtacaatatttgttaaatttcaaattacaaattaggaaagaagga |
14289691 |
T |
|
| Q |
573 |
taccatagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgtt |
641 |
Q |
| |
|
||| |||||||||||||||| || | |||| || || | ||||||||||||||||| |||||||||| |
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|
| T |
14289690 |
caccgtagcatatagagataagtattgtctt-aagtccatattaacatatgatgacaaccaaacttgtt |
14289623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 640
Target Start/End: Original strand, 15056677 - 15056746
Alignment:
| Q |
571 |
gataccatagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgt |
640 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||| | | |||||||||||||||| ||||||||| |
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|
| T |
15056677 |
gataccatagcatatagagataaaaattgtcttaaactccatactaacatatgatgacagccaaacttgt |
15056746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 468 - 556
Target Start/End: Complemental strand, 15052411 - 15052323
Alignment:
| Q |
468 |
ttgaatgtaggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattact |
556 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||| ||||| ||| |||||||| || ||||| ||||||||||||||||| |
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|
| T |
15052411 |
ttgaatgtaggtttctctcatgcatttaagaccctgtaggtggaaacagtataatttagcacacaatatgtgttaaatttcaaattact |
15052323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 22834310 - 22834367
Alignment:
| Q |
205 |
tgagtgatttagaagaacaaactactattgatcttcgacttgaacatttcaagttgca |
262 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22834310 |
tgagtgatccagaagaacaaactactattgatcttcaacttgaacatttcaagttgca |
22834367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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