View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4403-Insertion-5 (Length: 596)

Name: NF4403-Insertion-5
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4403-Insertion-5
NF4403-Insertion-5
[»] chr7 (8 HSPs)
chr7 (8-141)||(760802-760936)
chr7 (8-80)||(704534-704607)
chr7 (402-564)||(27984293-27984454)
chr7 (67-121)||(1408955-1409009)
chr7 (496-557)||(2647833-2647894)
chr7 (427-464)||(8140960-8140997)
chr7 (496-557)||(46516447-46516508)
chr7 (532-564)||(28617355-28617387)
[»] chr4 (10 HSPs)
chr4 (396-595)||(37781666-37781862)
chr4 (497-595)||(873614-873713)
chr4 (493-557)||(5269328-5269394)
chr4 (496-557)||(3991922-3991984)
chr4 (493-559)||(16630815-16630880)
chr4 (423-457)||(48142207-48142241)
chr4 (493-573)||(1983419-1983499)
chr4 (420-464)||(4956015-4956059)
chr4 (493-557)||(10047276-10047339)
chr4 (496-564)||(34670793-34670863)
[»] chr3 (6 HSPs)
chr3 (12-76)||(5934951-5935016)
chr3 (466-595)||(21156299-21156429)
chr3 (497-595)||(25516881-25516981)
chr3 (423-543)||(34482032-34482147)
chr3 (493-557)||(8370614-8370677)
chr3 (493-557)||(30709918-30709981)
[»] chr5 (3 HSPs)
chr5 (466-595)||(5611012-5611142)
chr5 (423-564)||(34842436-34842571)
chr5 (431-546)||(30899696-30899810)
[»] chr2 (9 HSPs)
chr2 (496-595)||(28770871-28770972)
chr2 (497-592)||(3277903-3277999)
chr2 (496-564)||(2869824-2869892)
chr2 (493-557)||(23078608-23078672)
chr2 (502-557)||(5699691-5699746)
chr2 (407-557)||(16388607-16388755)
chr2 (402-548)||(16388258-16388399)
chr2 (494-565)||(12632454-12632525)
chr2 (496-557)||(17865103-17865163)
[»] chr6 (9 HSPs)
chr6 (418-595)||(1115200-1115372)
chr6 (467-585)||(30519129-30519248)
chr6 (399-564)||(33721689-33721846)
chr6 (418-464)||(9036108-9036154)
chr6 (496-562)||(28301096-28301162)
chr6 (496-562)||(28510911-28510977)
chr6 (493-557)||(22963596-22963660)
chr6 (493-557)||(23824733-23824797)
chr6 (493-557)||(18232742-18232805)
[»] scaffold0076 (1 HSPs)
scaffold0076 (399-564)||(16119-16269)
[»] scaffold0002 (1 HSPs)
scaffold0002 (501-595)||(14589-14683)
[»] chr8 (3 HSPs)
chr8 (497-550)||(11771849-11771902)
chr8 (502-550)||(32916318-32916366)
chr8 (407-463)||(8863863-8863919)
[»] chr1 (5 HSPs)
chr1 (496-557)||(29651710-29651771)
chr1 (502-594)||(35109634-35109727)
chr1 (403-464)||(35109753-35109815)
chr1 (407-461)||(48591034-48591088)
chr1 (407-461)||(48600729-48600783)
[»] scaffold0148 (1 HSPs)
scaffold0148 (493-557)||(10625-10689)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 760802 - 760936
Alignment:
Q  8 gtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgactgagcttataaattctggtatgaatgacaa 106  Q
    ||||||||||| ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  760802 gtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatgactgagcttataaattctggtatgaatgacaa 760901  T
Q  107 ggctgccactgtttttaccttagccaatgaatctc 141  Q
    ||||||||||||||||||||||||||||| |||||    
T  760902 ggctgccactgtttttaccttagccaatggatctc 760936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 704607 - 704534
Alignment:
Q  8 gtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgactgag 80  Q
    ||||||||||| ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  704607 gtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatgactgag 704534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 564
Target Start/End: Original strand, 27984293 - 27984454
Alignment:
Q  402 ttgtagtgaactcaaacaaataa-tcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaaca 500  Q
    |||| ||||| |||||||||||| ||||| |||||||||||| || | ||||||||| ||| || ||| ||||||||||  ||  |||| | |||||||     
T  27984293 ttgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaatta-gta-taatcaatgaataaagtagtcttaagcaacg 27984390  T
Q  501 acaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    | ||||||||| | ||||| |||||||| |||||||| | ||||| |||||| |||||||||||    
T  27984391 ataacaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatttaaagaaacaaa 27984454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 1409009 - 1408955
Alignment:
Q  67 tgataatgactgagcttataaattctggtatgaatgacaaggctgccactgtttt 121  Q
    ||||||||||||||||||||||||||||||||| |||  |||||| |||||||||    
T  1409009 tgataatgactgagcttataaattctggtatgactgatgaggctgtcactgtttt 1408955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 2647894 - 2647833
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||| ||| | || || ||||||||||  |||||||||||||||||| ||||||    
T  2647894 caacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaag 2647833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 8140997 - 8140960
Alignment:
Q  427 acaccaataaaacttagatatgtggagcaaaagaagta 464  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  8140997 acaccaataaaactaagatgtgtggagcaaaagaagta 8140960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 46516508 - 46516447
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||| ||| | ||||| |||||||| | ||||||||||| ||||||| ||||||    
T  46516508 caacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaag 46516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 564
Target Start/End: Complemental strand, 28617387 - 28617355
Alignment:
Q  532 aagcaacaccacaagcatattcaaagaaacaaa 564  Q
    |||||||||||||||||||||||||| ||||||    
T  28617387 aagcaacaccacaagcatattcaaagcaacaaa 28617355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 396 - 595
Target Start/End: Original strand, 37781666 - 37781862
Alignment:
Q  396 ttcttgttgtagtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaag 495  Q
    |||||| ||| ||||| ||||||||||||| | |  |||||||||||||  ||||||||||||||||||    || || |||||| ||  ||   | ||     
T  37781666 ttcttggtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagta----gtcattaatgagtaaagtatcatcaat 37781761  T
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa-atatgaaagaagagaaggaaacaacacacc 594  Q
    |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| || ||||| |||||||| |||    
T  37781762 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataatagaagaaaacaacaaacc 37781861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 595
Target Start/End: Complemental strand, 873713 - 873614
Alignment:
Q  497 aacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaac-aaaatatgaaagaagagaaggaaacaacacacca 595  Q
    |||||||||||||||   ||||| |||||||| |||| ||||||||||| ||||||||||  ||| || ||| |||| |||| |||||||||||||||||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataaggaaacaacacacca 873614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 5269394 - 5269328
Alignment:
Q  493 aagcaacaacaacaacaaa--tatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||||||||||  ||||| ||||||||||| |  |||||||||||||||||| ||||||    
T  5269394 aagcaacaacaacaacaaaaatatacctagatctaagtgtagagcaacaccacaagcataatcaaag 5269328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Original strand, 3991922 - 3991984
Alignment:
Q  496 caacaacaacaacaaatata-cttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||||||| | | ||||||||||||| ||||||||||| ||||||||||| ||||    
T  3991922 caacaacaacaacaaacaaagcttagatctaagtgtgaagcaacactacaagcatatttaaag 3991984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 16630880 - 16630815
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaa 559  Q
    ||||| ||||||||| ||| | || ||||||||||| | ||||||||||||||||||| ||||||||    
T  16630880 aagcagcaacaacaa-aaacaaacctagatctaagtgtaaagcaacaccacaagcataatcaaagaa 16630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 48142207 - 48142241
Alignment:
Q  423 aatcacaccaataaaacttagatatgtggagcaaa 457  Q
    ||||||||||||||||||||||| |||||||||||    
T  48142207 aatcacaccaataaaacttagatgtgtggagcaaa 48142241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 573
Target Start/End: Complemental strand, 1983499 - 1983419
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaaatatgaaag 573  Q
    |||||||||||||||||||   ||||| |||||||| | ||||| |||||||| |||| |||||  ||||| ||| |||||    
T  1983499 aagcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaaacataatcaaaacaacaatataagaaag 1983419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 4956015 - 4956059
Alignment:
Q  420 aataatcacaccaataaaacttagatatgtggagcaaaagaagta 464  Q
    |||||||| ||||||| |||||||| |||||||||||| ||||||    
T  4956015 aataatcataccaatataacttagacatgtggagcaaaggaagta 4956059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 10047276 - 10047339
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||| |||||||| ||||| || ||||||||||| |  |||||||||||||||||| ||||||    
T  10047276 aagcaataacaacaa-aaatagacatagatctaagtgtagagcaacaccacaagcataatcaaag 10047339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 34670863 - 34670793
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaa----gtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    ||||||||||||||||||||| |||||||||    || ||||||  ||||| |||||||||||||| ||||||    
T  34670863 caacaacaacaacaaatatacctagatctaattaagtgtgaagc--caccaaaagcatattcaaagcaacaaa 34670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 5934951 - 5935016
Alignment:
Q  12 tattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgac 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  5934951 tattgttgtgaagcatcctgatagtgatttccaccttgataatcacatcccttttatgataatgac 5935016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 595
Target Start/End: Original strand, 21156299 - 21156429
Alignment:
Q  466 gtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa- 564  Q
    ||||||||||||||| ||  |||| | ||||||||| || |||||| | || ||||||||||  |||| |||||||| ||| |||||||||| ||||||     
T  21156299 gtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaacaaag 21156398  T
Q  565 atatgaaagaagagaaggaaacaacacacca 595  Q
    ||| |||||||| |||| |||||||||||||    
T  21156399 ataagaaagaagggaagaaaacaacacacca 21156429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 595
Target Start/End: Original strand, 25516881 - 25516981
Alignment:
Q  497 aacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaa-aatatgaaagaagagaagg-aaacaacacacc 594  Q
    ||||||||||| ||||| ||||||||| |||| |||| ||||||||||| |||||| |||| |||||  ||| ||||||||||| || ||||||||||||    
T  25516881 aacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacacc 25516980  T
Q  595 a 595  Q
    |    
T  25516981 a 25516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 543
Target Start/End: Original strand, 34482032 - 34482147
Alignment:
Q  423 aatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatacttagat 522  Q
    ||||||||||| ||| ||||||| ||||| ||||| |||| |     ||||||||||| ||  |||||| |||||||| |||||||||| | || |||||    
T  34482032 aatcacaccaacaaatcttagatgtgtggggcaaaggaagga-----taatcaatgagcaaagtagtttcaagcaacatcaacaacaaacagacctagat 34482126  T
Q  523 ctaagtttgaagcaacaccac 543  Q
    | |||| ||||| ||||||||    
T  34482127 caaagtgtgaagtaacaccac 34482147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 8370677 - 8370614
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || ||||||||||| |  |||||||||||||||||| ||||||    
T  8370677 aagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 8370614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 30709981 - 30709918
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || |||||||||||||  |||||||||| ||||||| ||||||    
T  30709981 aagcaacaacaacaa-aaacagacctagatctaagtttagagcaacaccataagcataatcaaag 30709918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 595
Target Start/End: Original strand, 5611012 - 5611142
Alignment:
Q  466 gtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa- 564  Q
    ||||||||||||||| ||  |||| | ||||||||| || |||||| | || ||||||||||  |||| |||||||| ||| |||||||||| ||||||     
T  5611012 gtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaacaaag 5611111  T
Q  565 atatgaaagaagagaaggaaacaacacacca 595  Q
    ||| |||||||| |||| |||||||||||||    
T  5611112 ataagaaagaagggaagaaaacaacacacca 5611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 34842436 - 34842571
Alignment:
Q  423 aatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatacttagat 522  Q
    ||||||||||||||| ||||||| ||||||| ||| ||||||    |||||||| ||| ||  |||  | ||||| ||||||||| ||| | || |||||    
T  34842436 aatcacaccaataaa-cttagatgtgtggagtaaaggaagta----gtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagat 34842529  T
Q  523 ctaagtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    |||||| |||||||||||||||||||||| | ||| ||||||    
T  34842530 ctaagtgtgaagcaacaccacaagcatatccgaagcaacaaa 34842571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 546
Target Start/End: Original strand, 30899696 - 30899810
Alignment:
Q  431 caataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaa---atatacttagatctaag 527  Q
    ||||||||||||||| |||||||| ||||||     |||||||||||||| ||  |||  | ||||||||||||||||||   ||| || |||||| |||    
T  30899696 caataaaacttagatgtgtggagctaaagaa----atagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaag 30899791  T
Q  528 tttgaagcaacaccacaag 546  Q
    | | |||||||||||||||    
T  30899792 tgttaagcaacaccacaag 30899810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 496 - 595
Target Start/End: Complemental strand, 28770972 - 28770871
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag-aaacaaaatatgaaagaagag-aaggaaacaacacac 593  Q
    ||||||| |||||||||| || ||||||||||| ||||||||||||||||||||| |||||| ||| || |||  ||||||||| |||||||||| ||||    
T  28770972 caacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaagacac 28770873  T
Q  594 ca 595  Q
    ||    
T  28770872 ca 28770871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 592
Target Start/End: Original strand, 3277903 - 3277999
Alignment:
Q  497 aacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag-aaacaaaatatgaaagaagagaaggaaacaacaca 592  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||| |||| ||||||||||| ||| || ||| |||| |||||| ||||| ||||||    
T  3277903 aacaacaacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaataagagagggaaaaaacaca 3277999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 2869892 - 2869824
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    |||||||||||||||||| || || |||||||| |  |||||||||| |||||||||||||| ||||||    
T  2869892 caacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaacaaa 2869824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 23078672 - 23078608
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| |||| ||||||||||| |  |||||||||||||||||| ||||||    
T  23078672 aagcaacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaag 23078608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 5699691 - 5699746
Alignment:
Q  502 caacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||| || ||||||||||| | |||||||||||||||| |||||||||    
T  5699691 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaag 5699746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 557
Target Start/End: Complemental strand, 16388755 - 16388607
Alignment:
Q  407 gtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagttt---gaagcaacaaca 503  Q
    ||||| ||||||||||||||||| |||| |||||||||| ||||||||||||  |    ||||||||||||||| ||  |||| |   | |||| |||||    
T  16388755 gtgaattcaaacaaataatcacatcaat-aaacttagatgtgtggagcaaaaata----gtagtaatcaatgagtaaagtagtctcaagcagcagcaaca 16388661  T
Q  504 acaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||| | || ||||| || || ||||||||||| | |||||||| |||||    
T  16388660 acaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaag 16388607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 16388258 - 16388399
Alignment:
Q  402 ttgtagtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaacaa 501  Q
    |||| ||||| || |||||||||||||||| ||||| ||||||| |||||||||||  |||||    |||||||||||  ||  |||| | ||||| |||    
T  16388258 ttgttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagta----gtaatcaatgaataaagtagtctcaagcagcaa 16388352  T
Q  502 caacaacaaatatacttagatctaagtttgaagcaacaccacaagca 548  Q
    |||||||||| | || || || ||||| |||| |||||| |||||||    
T  16388353 caacaacaaacaaacatatatataagtgtgaaacaacactacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 565
Target Start/End: Original strand, 12632454 - 12632525
Alignment:
Q  494 agcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaaa 565  Q
    ||||||||||| |||||| | || ||||| ||||| | ||||||||||||||||||||  |||| |||||||    
T  12632454 agcaacaacaataacaaacagacctagatataagtgtcaagcaacaccacaagcatatctaaaggaacaaaa 12632525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Original strand, 17865103 - 17865163
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||| ||| |||| ||||||||||| |  |||||||||||||||||| ||||||    
T  17865103 caacaacaacaa-aaacatacctagatctaagtgtagagcaacaccacaagcataatcaaag 17865163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 595
Target Start/End: Complemental strand, 1115372 - 1115200
Alignment:
Q  418 caaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatact 517  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||    ||||||||||||||| ||  ||| || |||   ||||||||||||||| ||     
T  1115372 caaataatcgcaccaataaaacttagatatatggagtaaaagaa----gtagtaatcaatgagcaaagtagcttcaag---caacaacaacaaatagaca 1115280  T
Q  518 tagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa-atatgaaagaagag-aaggaaacaacacacca 595  Q
    |||||||  || ||||| |||||||||  | |||| |||  |||||| |||||| ||| ||| |||||||||||||||||    
T  1115279 tagatctctgtgtgaagtaacaccacagtcttatttaaaccaacaaagatatgacagatgagaaaggaaacaacacacca 1115200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 467 - 585
Target Start/End: Complemental strand, 30519248 - 30519129
Alignment:
Q  467 tagtaatcaatgagaaacatagtttgaagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa-a 565  Q
    |||||||||||||  || ||||| | || |||||||||||||||| ||| |||||| ||||| ||||||||||||| || |||||| |||| |||||| |    
T  30519248 tagtaatcaatgatcaaaatagtctcaaacaacaacaacaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaaga 30519149  T
Q  566 tatgaaagaagagaaggaaa 585  Q
    || |||| ||||||| ||||    
T  30519148 taagaaataagagaaagaaa 30519129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 564
Target Start/End: Complemental strand, 33721846 - 33721689
Alignment:
Q  399 ttgttgtagtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaa 498  Q
    ||||||| ||||| |  |||||||||||||| |||||||||  |||| |||||| |||| ||||||    |||||| ||||| ||  |||||| ||||||    
T  33721846 ttgttgttgtgaatttgaacaaataatcacatcaataaaacc-agatgtgtggaacaaaggaagta----gtaatcgatgagtaaagtagtttcaagcaa 33721752  T
Q  499 caacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    |||||||||   | || | ||||||||||| |||| || |||||||| ||||||||||| ||||||    
T  33721751 caacaacaa---acatccctagatctaagtgtgaaacatcaccacaaacatattcaaagcaacaaa 33721689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 9036108 - 9036154
Alignment:
Q  418 caaataatcacaccaataaaacttagatatgtggagcaaaagaagta 464  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  9036108 caaataattacaccaataaatcttagatatgtggagcaaatgaagta 9036154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 28301162 - 28301096
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaaca 562  Q
    |||||| ||||| ||| |||| |||||| |||| ||||||||||| |||| ||||||||||||||||    
T  28301162 caacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaaca 28301096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 28510911 - 28510977
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaaca 562  Q
    |||||| ||||| ||| |||| |||||| |||| ||||||||||| |||| ||||||||||||||||    
T  28510911 caacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaaca 28510977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 22963596 - 22963660
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || ||||||||||| |  |||||||||||||||||| ||||||    
T  22963596 aagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 22963660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 23824797 - 23824733
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || ||||||||||| |  |||||||||||||||||| ||||||    
T  23824797 aagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 23824733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 18232742 - 18232805
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || ||||||||||| |  |||||||||||||||||| ||||||    
T  18232742 aagcaacaacaacaa-aaacaaacctagatctaagtgtagagcaacaccacaagcataatcaaag 18232805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 564
Target Start/End: Complemental strand, 16269 - 16119
Alignment:
Q  399 ttgttgtagtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagtacgtagtaatcaatgagaaacatagtttgaagcaa 498  Q
    ||||||| ||||| |  ||| |||||| ||||||||||||||||||| ||| ||||||| ||||||    ||||||||||||     |||||| ||||||    
T  16269 ttgttgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagta----gtaatcaatgag-----tagtttcaagcaa 16179  T
Q  499 caacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa 564  Q
    ||||||      || ||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||    
T  16178 caacaa------atttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaa 16119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 595
Target Start/End: Original strand, 14589 - 14683
Alignment:
Q  501 acaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa-atatgaaagaagagaaggaaacaacacacca 595  Q
    ||||||||||| |||| || |||||||| ||||| |||||| ||||||| |||||||||||||| |||  ||||||||||| |||| |||||||||    
T  14589 acaacaacaaacatacctatatctaagtatgaagaaacacctcaagcatgttcaaagaaacaaagata-aaaagaagagaaagaaaaaacacacca 14683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 550
Target Start/End: Original strand, 11771849 - 11771902
Alignment:
Q  497 aacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcata 550  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||||| |||||||    
T  11771849 aacaaaaacaacaaacatacctagatctaagtatgaagcaacaccaaaagcata 11771902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 32916318 - 32916366
Alignment:
Q  502 caacaacaaatatacttagatctaagtttgaagcaacaccacaagcata 550  Q
    |||||||||||| |||||||| ||||| |||| ||||||||||||||||    
T  32916318 caacaacaaataaacttagatataagtatgaaccaacaccacaagcata 32916366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 8863919 - 8863863
Alignment:
Q  407 gtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaagt 463  Q
    ||||| || ||||||||||||||||||||||||||| || |||| | |||| |||||    
T  8863919 gtgaattcgaacaaataatcacaccaataaaacttaaatgtgtgaaacaaaggaagt 8863863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 557
Target Start/End: Original strand, 29651710 - 29651771
Alignment:
Q  496 caacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    |||||||||||| ||| | |||||||||||||| |  |||||||||||||||||| ||||||    
T  29651710 caacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaag 29651771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 594
Target Start/End: Complemental strand, 35109727 - 35109634
Alignment:
Q  502 caacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaagaaacaaa-atatgaaagaagagaaggaaacaacacacc 594  Q
    |||||||||| | || |||||||||||  | | ||||||||||| |||| | ||||||||||| | | |||||||||||| |||||||||||||    
T  35109727 caacaacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaagaaacaacacacc 35109634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 35109815 - 35109753
Alignment:
Q  403 tgtagtgaactcaaacaaa-taatcacaccaataaaacttagatatgtggagcaaaagaagta 464  Q
    ||||||||| || |||||| |||||||||||||||||||||||| ||| ||| ||| ||||||    
T  35109815 tgtagtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagta 35109753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 48591088 - 48591034
Alignment:
Q  407 gtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaa 461  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||| || |||||||    
T  48591088 gtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaa 48591034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 48600783 - 48600729
Alignment:
Q  407 gtgaactcaaacaaataatcacaccaataaaacttagatatgtggagcaaaagaa 461  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||| || |||||||    
T  48600783 gtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaa 48600729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 10625 - 10689
Alignment:
Q  493 aagcaacaacaacaacaaatatacttagatctaagtttgaagcaacaccacaagcatattcaaag 557  Q
    ||||||||||||||| ||| | || || |||||||| |  |||||||||||||||||| ||||||    
T  10625 aagcaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaag 10689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University