View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403-Insertion-6 (Length: 542)
Name: NF4403-Insertion-6
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 28953555 - 28954089
Alignment:
| Q |
8 |
gaatcatcatcagtaatctgagactcacaatcttttgatgtggatgaactattttgtgtctctgaaacattttgatttggtacttgattttttgtttcat |
107 |
Q |
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| T |
28953555 |
gaatcatcatcagtaatctgagaatcacaatcttttgatgtggatgaactattctgtgtctctgaaacattttgatttggtacttgattttgtgtttcat |
28953654 |
T |
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| Q |
108 |
ttgcttctgaatatttggaatttgaactaattgatgatgacccacaagaattttcacaattctgtgatgaatcagaatgccccagttgttttgatttgga |
207 |
Q |
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| T |
28953655 |
ttgcttctgaatatttggaatttgaactaattgatgatgacccacaagaattttcacaattctgtgatgaatcagaatgccccaattgttttgatttgga |
28953754 |
T |
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| Q |
208 |
ggatttgctgaaagattcaagctttttccttaaaaatttaagctttctctcagatttatctcttaatttgatctcttctttaaccaatttttccaactca |
307 |
Q |
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| T |
28953755 |
ggatttgctgaaagattcaagctttttccttaaaaatttaagctttctctcagatttatctcttaatttgatctcttctttaaccaatttttccaactca |
28953854 |
T |
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| Q |
308 |
accaactatcaaaaaataactttcaattatttcagaaatagaaacacaaaaacagaataatagttatgacagaaaaacatgagtgtcattttcttctttc |
407 |
Q |
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| T |
28953855 |
accaactatcaaaaaataactttcaattatttcagaaatagaaacacaaaaacagaataaaagttatgtcagaaaaacatgagtgtcattttcttctttc |
28953954 |
T |
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| Q |
408 |
ctttatgatgatgttctaaacaatgtcacagaaaagtgaattgaaacattgttactattagttaaaaggtaaaaaatattattaccttattggccattaa |
507 |
Q |
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| T |
28953955 |
ctttatgatgatgttctaaacaatgtcacagaaaagtgaattgaaacattgttactattagttaaaaggtaaaaaatattattaccttattggccattaa |
28954054 |
T |
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| Q |
508 |
ttctgcttgttccttagctacttttgaagcctgtc |
542 |
Q |
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| T |
28954055 |
ttctgcttgttccttagctacttttgaagcctgtc |
28954089 |
T |
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