View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4403-Insertion-8 (Length: 900)
Name: NF4403-Insertion-8
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403-Insertion-8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 900
Target Start/End: Original strand, 38747460 - 38748354
Alignment:
| Q |
8 |
caacaaccttattaaggttgtcgttatttcccaaaaacatgttcatattgttgttaatgatgttattgtcaacatcattgaaacttggtgtcaaattctg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38747460 |
caacaaccttattaaggttgtcgttatttcccaaaaacatgttcatattgttgttaatgatgttattgtcaacatcattgaaacttggtgtcaaattctg |
38747559 |
T |
|
| Q |
108 |
atgaattgattgtgaaagaatattgaaatgttgttgatgatcaaaagaagaagaaggtgaaacaatagactgttgctgattctgttcctctggaacatca |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38747560 |
atgaatggattgtgaaagaatattgaaatgttgttgatgatcaaatgaagaagaaggtgaaacaataaactgttgctgattctgttcctctggaacatca |
38747659 |
T |
|
| Q |
208 |
agagattcaagataacccatgttttgtatctgaagtgctttagcagcagaaacagaaacaggt---nnnnnnnnnnnnnnnnntgaaccgtcattgaaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38747660 |
agagattcaagataacccatgttttgtatctgaagtgctttagcagcagaaacagaaacaggtgaagaagaagaagcagaagatgaaccgtcattgaaat |
38747759 |
T |
|
| Q |
305 |
tcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgtgaaagcgatgaaacacc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
38747760 |
tcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgtgaaagcgatgaaacacc |
38747859 |
T |
|
| Q |
405 |
gtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggagaattattagcaccatta |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38747860 |
gtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggagaattattagcaccatta |
38747959 |
T |
|
| Q |
505 |
cca------ttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagcttgttatttttcttgttgc |
598 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38747960 |
ccattaccgttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagcttgttatttttcttgttgc |
38748059 |
T |
|
| Q |
599 |
atgaaaaatgttcatttgaagatggagaagatgatgtaattggaaggattcttaattgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtt |
698 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748060 |
atgaaaaatgttcattt---------gaagatgatgtaactggaaggattcttaattgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtt |
38748150 |
T |
|
| Q |
699 |
tttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattcaaaaacgccgtgagcgaattcacaagtatcgccgcggttacagcca |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38748151 |
tttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaattcacaagtatcaccgcggttacagcca |
38748250 |
T |
|
| Q |
799 |
ccgcggcgatactcagggc-aaccgtccctgagtaatgaaaccgccgtggatcacggc-gcgagcttttctcacc-gggtgagcaaatggacagtcagtc |
895 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
38748251 |
ccgcggcgatactcagggcaaactgtccctgagtaatgaaaccgccgtggatcacggcggcgagc-tttctcaccggggtgagcgaatggacagtcagtc |
38748349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 654 - 776
Target Start/End: Complemental strand, 30385830 - 30385708
Alignment:
| Q |
654 |
ttgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtttttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattca |
753 |
Q |
| |
|
||||||||| || || ||||| ||||||| ||||| |||||| |||||||||||||| || ||||||||||| || || | ||| || | |||||| ||| |
|
|
| T |
30385830 |
ttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatctttacaagcttcagttctataccttgaagggtgcaaccagcactca |
30385731 |
T |
|
| Q |
754 |
aaaacgccgtgagcgaattcaca |
776 |
Q |
| |
|
||||| ||||| | ||||||||| |
|
|
| T |
30385730 |
aaaactccgtgggagaattcaca |
30385708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 770
Target Start/End: Complemental strand, 47894012 - 47893962
Alignment:
| Q |
720 |
agttctgtatctagcaggatgaagccagcattcaaaaacgccgtgagcgaa |
770 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||| || |||||||| |
|
|
| T |
47894012 |
agttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaa |
47893962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University