View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4403-Insertion-9 (Length: 707)

Name: NF4403-Insertion-9
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4403-Insertion-9
NF4403-Insertion-9
[»] chr8 (19 HSPs)
chr8 (236-707)||(6013947-6014418)
chr8 (8-244)||(6014732-6014970)
chr8 (344-544)||(45113186-45113386)
chr8 (345-531)||(36991285-36991470)
chr8 (345-527)||(30426630-30426811)
chr8 (345-527)||(28069652-28069833)
chr8 (344-535)||(37966404-37966592)
chr8 (345-531)||(10672475-10672658)
chr8 (364-526)||(40695228-40695388)
chr8 (345-516)||(28318857-28319033)
chr8 (364-527)||(41511195-41511357)
chr8 (345-501)||(44859130-44859283)
chr8 (345-527)||(10652578-10652760)
chr8 (379-469)||(26749543-26749632)
chr8 (445-535)||(27490066-27490156)
chr8 (420-470)||(24557216-24557266)
chr8 (345-401)||(5033310-5033366)
chr8 (394-470)||(6399914-6399989)
chr8 (477-513)||(21492730-21492766)
[»] chr7 (24 HSPs)
chr7 (344-544)||(33450422-33450622)
chr7 (344-543)||(47500242-47500441)
chr7 (348-542)||(34985909-34986102)
chr7 (345-526)||(45260388-45260568)
chr7 (345-527)||(21151085-21151266)
chr7 (345-516)||(9559015-9559185)
chr7 (345-531)||(4888396-4888581)
chr7 (351-533)||(7362495-7362676)
chr7 (345-527)||(16366451-16366632)
chr7 (345-527)||(18198189-18198370)
chr7 (364-527)||(12139261-12139422)
chr7 (364-527)||(25084708-25084870)
chr7 (347-527)||(32915892-32916067)
chr7 (348-527)||(29630981-29631156)
chr7 (345-416)||(44648008-44648078)
chr7 (345-527)||(47226037-47226215)
chr7 (446-531)||(44565577-44565662)
chr7 (352-515)||(33608845-33609007)
chr7 (379-469)||(47799895-47799984)
chr7 (477-513)||(6568420-6568456)
chr7 (378-470)||(39855807-39855898)
chr7 (448-515)||(5463966-5464033)
chr7 (345-407)||(47271109-47271170)
chr7 (347-430)||(47270580-47270661)
[»] chr6 (21 HSPs)
chr6 (345-543)||(227524-227722)
chr6 (345-516)||(4804392-4804562)
chr6 (344-540)||(13888482-13888668)
chr6 (345-513)||(21159330-21159497)
chr6 (345-516)||(7162028-7162198)
chr6 (345-516)||(17944106-17944276)
chr6 (345-515)||(12412582-12412751)
chr6 (345-527)||(1249109-1249288)
chr6 (345-527)||(27826471-27826652)
chr6 (345-485)||(13089710-13089849)
chr6 (380-515)||(17828564-17828698)
chr6 (409-527)||(29698096-29698214)
chr6 (446-516)||(32737818-32737888)
chr6 (465-541)||(31708273-31708349)
chr6 (345-416)||(32737901-32737971)
chr6 (364-521)||(30460759-30460918)
chr6 (348-515)||(7215816-7215981)
chr6 (382-515)||(2800609-2800740)
chr6 (481-541)||(2142379-2142439)
chr6 (379-469)||(24484870-24484959)
chr6 (446-515)||(28696701-28696770)
[»] chr3 (19 HSPs)
chr3 (344-543)||(48084736-48084935)
chr3 (345-516)||(27033595-27033765)
chr3 (348-531)||(2229912-2230094)
chr3 (345-527)||(40851706-40851888)
chr3 (345-535)||(43719908-43720097)
chr3 (345-513)||(19830392-19830560)
chr3 (364-527)||(550797-550958)
chr3 (382-543)||(40810353-40810513)
chr3 (364-527)||(34373565-34373727)
chr3 (345-501)||(34373790-34373945)
chr3 (364-527)||(46167326-46167488)
chr3 (347-501)||(10474402-10474554)
chr3 (446-531)||(52859441-52859527)
chr3 (345-436)||(24754681-24754771)
chr3 (345-436)||(24763678-24763768)
chr3 (364-501)||(12402924-12403061)
chr3 (432-510)||(2310261-2310337)
chr3 (481-516)||(20485814-20485849)
chr3 (481-514)||(20485715-20485748)
[»] chr4 (40 HSPs)
chr4 (344-544)||(47922326-47922526)
chr4 (345-527)||(19901879-19902060)
chr4 (345-516)||(56558223-56558393)
chr4 (345-516)||(5763123-5763293)
chr4 (345-516)||(23610586-23610756)
chr4 (345-536)||(34778345-34778535)
chr4 (345-516)||(3952131-3952301)
chr4 (345-531)||(39862446-39862631)
chr4 (446-541)||(31862281-31862376)
chr4 (345-527)||(18207001-18207182)
chr4 (453-527)||(26428576-26428650)
chr4 (345-527)||(33262513-33262694)
chr4 (345-526)||(5416427-5416608)
chr4 (345-467)||(12312436-12312558)
chr4 (364-493)||(30567868-30567996)
chr4 (454-543)||(34927011-34927100)
chr4 (345-516)||(38079681-38079851)
chr4 (420-531)||(12241443-12241554)
chr4 (380-503)||(23474068-23474190)
chr4 (345-527)||(33247091-33247270)
chr4 (349-435)||(34927510-34927596)
chr4 (375-429)||(26428999-26429053)
chr4 (446-527)||(12153104-12153185)
chr4 (448-527)||(25442237-25442317)
chr4 (345-407)||(12153206-12153268)
chr4 (420-515)||(46804585-46804671)
chr4 (448-527)||(52018716-52018795)
chr4 (453-527)||(12312571-12312645)
chr4 (345-527)||(24073550-24073730)
chr4 (380-469)||(56453816-56453904)
chr4 (481-541)||(1015941-1016001)
chr4 (363-503)||(42844167-42844305)
chr4 (465-517)||(53325369-53325421)
chr4 (449-527)||(3326449-3326528)
chr4 (481-547)||(47834504-47834570)
chr4 (345-407)||(52018815-52018877)
chr4 (446-527)||(17080701-17080782)
chr4 (489-541)||(618829-618881)
chr4 (347-407)||(33841768-33841827)
chr4 (483-515)||(56564675-56564707)
[»] chr1 (27 HSPs)
chr1 (344-543)||(18976264-18976460)
chr1 (345-516)||(50294024-50294194)
chr1 (345-527)||(50484319-50484500)
chr1 (345-527)||(12151700-12151881)
chr1 (344-527)||(1228500-1228670)
chr1 (398-527)||(12380924-12381052)
chr1 (398-527)||(12384991-12385119)
chr1 (345-416)||(45978049-45978119)
chr1 (348-536)||(23861916-23862107)
chr1 (345-407)||(12380838-12380900)
chr1 (345-407)||(12384905-12384967)
chr1 (345-531)||(40328205-40328389)
chr1 (446-541)||(46608438-46608528)
chr1 (382-515)||(39426156-39426287)
chr1 (446-541)||(2845184-2845280)
chr1 (366-434)||(7840661-7840728)
chr1 (452-516)||(40988659-40988723)
chr1 (446-502)||(45970804-45970860)
chr1 (446-513)||(7841771-7841838)
chr1 (420-527)||(44483701-44483807)
chr1 (379-469)||(30077639-30077728)
chr1 (450-527)||(45977955-45978032)
chr1 (345-470)||(48327115-48327238)
chr1 (383-469)||(26860049-26860134)
chr1 (379-469)||(52280034-52280123)
chr1 (348-409)||(32361271-32361332)
chr1 (444-521)||(42720817-42720893)
[»] chr5 (27 HSPs)
chr5 (348-531)||(4895699-4895881)
chr5 (345-527)||(40753123-40753304)
chr5 (345-526)||(35660570-35660750)
chr5 (345-544)||(14349720-14349917)
chr5 (345-516)||(32129578-32129748)
chr5 (345-513)||(37266678-37266845)
chr5 (345-527)||(11775725-11775907)
chr5 (345-548)||(13032031-13032232)
chr5 (345-544)||(18625382-18625580)
chr5 (349-527)||(39902348-39902525)
chr5 (378-535)||(3057148-3057304)
chr5 (344-509)||(3057367-3057530)
chr5 (345-407)||(43309160-43309222)
chr5 (364-501)||(34827152-34827287)
chr5 (446-527)||(10173881-10173958)
chr5 (409-536)||(4592725-4592851)
chr5 (364-527)||(8440951-8441113)
chr5 (345-515)||(29340942-29341108)
chr5 (379-469)||(36290593-36290682)
chr5 (446-531)||(1475699-1475784)
chr5 (347-404)||(9460599-9460655)
chr5 (481-516)||(23253737-23253772)
chr5 (481-515)||(10242777-10242811)
chr5 (347-437)||(18653384-18653472)
chr5 (344-437)||(27428842-27428933)
chr5 (475-516)||(38283826-38283867)
chr5 (422-470)||(28142812-28142860)
[»] scaffold0012 (1 HSPs)
scaffold0012 (345-527)||(207996-208177)
[»] chr2 (18 HSPs)
chr2 (345-516)||(35316769-35316939)
chr2 (345-527)||(28564824-28565006)
chr2 (345-545)||(13238596-13238795)
chr2 (345-516)||(23259448-23259618)
chr2 (346-416)||(40640713-40640783)
chr2 (344-543)||(38823953-38824141)
chr2 (344-416)||(2063398-2063468)
chr2 (345-416)||(11864913-11864983)
chr2 (382-503)||(30709066-30709187)
chr2 (379-468)||(8988847-8988935)
chr2 (446-527)||(39465708-39465789)
chr2 (446-527)||(41983401-41983481)
chr2 (447-535)||(12949395-12949482)
chr2 (345-405)||(45625040-45625100)
chr2 (363-477)||(21454475-21454586)
chr2 (345-503)||(19908737-19908892)
chr2 (446-527)||(374499-374580)
chr2 (481-517)||(30824121-30824157)
[»] scaffold0035 (1 HSPs)
scaffold0035 (364-526)||(16377-16538)
[»] scaffold0250 (1 HSPs)
scaffold0250 (365-527)||(7080-7241)
[»] scaffold0126 (1 HSPs)
scaffold0126 (364-535)||(22423-22592)
[»] scaffold0456 (2 HSPs)
scaffold0456 (446-515)||(13641-13710)
scaffold0456 (345-430)||(13709-13794)
[»] scaffold0009 (1 HSPs)
scaffold0009 (344-501)||(6395-6551)
[»] scaffold0008 (1 HSPs)
scaffold0008 (345-527)||(9162-9340)
[»] scaffold0006 (2 HSPs)
scaffold0006 (345-407)||(73818-73880)
scaffold0006 (446-527)||(73901-73982)
[»] scaffold0121 (1 HSPs)
scaffold0121 (381-470)||(29566-29654)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 236 - 707
Target Start/End: Complemental strand, 6014418 - 6013947
Alignment:
Q  236 tagattttattgtctaattcatatattttgtatgcttcatattttttgccccttattcacttctagtattaattactaacaaggaaatgtttagtgcggg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||        
T  6014418 tagattttattgtctaattcatatattttgtatgcttcatattttttgccccttattcacttctagtattaattactaataaggaaatgtttaatgtttt 6014319  T
Q  336 ttaagaactaagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagt 435  Q
      | | | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6014318 aaacggattaagatcctctccatttgctaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagt 6014219  T
Q  436 gaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  6014218 ggatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatacctctccaaatggtagaaataaagaaggacataaatgaagaagat 6014119  T
Q  536 tttgacccgttttagacacggtgtaggagaatgtgtaaccatcacgtacattttagtcccttcttcttgctctattagtacaacaaaaataaggtaaagg 635  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6014118 tttgacccattttagacacggtctaggagaatgtgtaaccatcacgtacattttagtcccttcttcttgctcaattagtacaacaaaaataaggtaaagg 6014019  T
Q  636 aaaaggacacattcaaactctcgtgctccgagtatgtatgtatgcacgtatcttttcacaatcccttttgag 707  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6014018 aaaaggacacattcaaactcccgtgctccgagtatgtatgtatgcacgtatcttttcacaatcccttttgag 6013947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 6014970 - 6014732
Alignment:
Q  8 atgtttatcgcactccat--ctgttatttatagcaagagttattacaagccacataaagaacaattcgtaaccgtgttgaaaactcaactggaacaaaga 105  Q
    |||||||| |||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  6014970 atgtttatagcactccatatctattatttatagcaagagttattacaagccacacaaagaacaattcgtaaccgtgttgaaaactcaattggaacaaaga 6014871  T
Q  106 aaaatagtccagttttcaattaatgacttcaagttcaacttaataaaaagattttgaaatgtatgaaaatgacgtggtcaagcatgtatttgtcctatga 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6014870 aaaatagtccagtttttaattaatgacttcaagttcaacttaataaaaagattttgaaatgtatgaaaatgacgtggtcaagcatgtatttgtcctatga 6014771  T
Q  206 aacacaattcgtttgatgtttcatgttgtttagatttta 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6014770 aacacaattcgtttgatgtttcatgttgtttagatttta 6014732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 344 - 544
Target Start/End: Complemental strand, 45113386 - 45113186
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||| |||||||||| | ||||||||||||||||| | ||||||||||||||||||||| | ||||| |||| ||||||  ||| |    
T  45113386 taagatcctctccatttgctaaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtccca 45113287  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||||||||||| ||||| |||||| |||| ||| ||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| |||||||||||    
T  45113286 tcatcattaattattttttatttttttcaaaattttatgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggagaggattttgaccc 45113187  T
Q  544 g 544  Q
    |    
T  45113186 g 45113186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 345 - 531
Target Start/End: Complemental strand, 36991470 - 36991285
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||| || | |||||||||| |||||||||| ||||||  ||| |     
T  36991470 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataaga-aatagatgatgggtcctaccactaagtgggtcccac 36991372  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
     |||||||||||| ||| |||||||| || | |||  |||||| ||||||||||||| | ||||||||||||  |||||||||||||    
T  36991371 catcattaattatatttgacttttttcaagattttacgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaaga 36991285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 30426630 - 30426811
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||| |||||| |||||  ||||||||| | ||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  30426630 aagaccctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 30426728  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||| ||  |||||||||    
T  30426729 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaatg 30426811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 28069833 - 28069652
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||| ||||||| ||||||| ||| |||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  28069833 aagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 28069735  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||||| |||||| || ||  |||||||||    
T  28069734 catcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgaaaaacacataaatg 28069652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 344 - 535
Target Start/End: Original strand, 37966404 - 37966592
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| |||||  ||||||||| || ||| |||||||| ||| ||||| |||||||| |||||||  |||||||||||| ||| |||| || |    
T  37966404 taagatcctctccatttggcaaaataaatggaattt-gcaatttgaagagagataaacacaaaa-aatagattgtaggtcctaccactaattgaacccaa 37966501  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    | | |||||||||| |||||||||||| |||  ||| ||| ||| |||||||||||||   |||||||||||| ||||||||| ||||||||    
T  37966502 t-accattaattatattttactttttttaaatttttatgtatctttatctctccaaataaaagaaatggagaaagacataaattaagaagat 37966592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 531
Target Start/End: Original strand, 10672475 - 10672658
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||| ||||| |||||  ||||||||| ||||||||||| |||||||  ||||||||||||| |||||||| | | |||||||| ||||||| ||| |     
T  10672475 aagattctctccatttggcaaaataaatggagttttgcaagttggaga--gatagacacaaaa-aatagatggtggatcctaccactaagtgagtcccac 10672571  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
     |||||||||||| ||||||  |||| |||| ||| ||| | | ||||||||||||| | | ||||| ||||  |||||||||||||    
T  10672572 catcattaattatattttaccctttttaaaattttatgtatttttatctctccaaattgaataaatgaagaaacacataaatgaaga 10672658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 364 - 526
Target Start/End: Original strand, 40695228 - 40695388
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| |||||| | || ||||||| |||||||||||||| |||||||| |||||||||||| ||||||| | | |  ||||||| |||| |||||    
T  40695228 aaaataaatggagtttgg-aagttggagagagatagacacaaaa-aatagatggtaggtcctaccactaagtgagttccaccatcattagttatatttta 40695325  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaat 526  Q
    ||||||| || | ||| ||| ||| |||| |||||||| | ||||||||| ||  ||||||||    
T  40695326 cttttttcaagattttatgtttctttatccctccaaattgaagaaatggataaatacataaat 40695388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 28318857 - 28319033
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaaga-----atagatgataggtcctaccattaagtgaat 439  Q
    |||||| ||| |||||| |||||||||| ||||||||||| || |||| ||||| ||| |||| |     | ||||  | |||||||||| ||||||  |    
T  28318857 aagatcttctttatttggtaaaataaatggagttttgcaagtttgagagagatatacaaaaaaaataaaaaaagatagtgggtcctaccactaagtgggt 28318956  T
Q  440 cctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    || |  |||||||||||| |||||||||||| |||| ||| ||||||| | ||||||||||| | ||||||||||||    
T  28318957 ccaaccatcattaattatattttactttttttaaaattttatgtgtctttgtctctccaaattgaagaaatggagaa 28319033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 41511357 - 41511195
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| ||||||||||| ||||| | ||||||| | |||| |||||||  | ||||||| || ||||||  | | |  |||||||||||| |||||    
T  41511357 aaaataaatggagttttgcaagttggaaagagatagatataaaa-aatagatagtgggtcctatcactaagtggtttccaccatcattaattatatttta 41511259  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||| || | ||| ||||| | ||||||||||||| | ||||||||| ||  |||||||||    
T  41511258 cttttttcaagattttatgtgtttttatctctccaaattgaagaaatggaaaaacacataaatg 41511195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 501
Target Start/End: Original strand, 44859130 - 44859283
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||||||||||||||  ||||||||| ||||||||||| || |||| ||||||||    || |||||||| | ||| |||||| ||||||  ||| |     
T  44859130 aagatcctctctatttgacaaaataaatggagttttgcaagttagagagagatagac---taaaaatagatggtgggttctaccactaagtgggtcccac 44859226  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
     |||||||||||| ||||| |||||  |||| ||   |||||| |||||||||||||    
T  44859227 catcattaattatattttattttttaaaaaatttcacgtgtctttatctctccaaat 44859283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 10652578 - 10652760
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||||| | ||||||||| ||||||| ||||||| |||||| ||| |||| | |||| ||| | ||| ||  ||| |     
T  10652578 aagatcctctccatttggtaaaataaatggtgttttgcaagttggagagagatagatacaaaa-aattgatggtgggtcatactactaattgggtcccac 10652676  T
Q  445 tatcattaattat-gttttac-ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     ||||||||||||  |||||| |||||| |||| ||| ||||| | ||||||||||||| | ||||||| ||||  |||||||||    
T  10652677 catcattaattatatttttactttttttcaaaattttatgtgt-tttatctctccaaattgaagaaatgaagaaacacataaatg 10652760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 26749543 - 26749632
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| |||||||||||||| ||||  |||| ||||||| || ||||||  ||| |  |||||||||||| |||||||||||    
T  26749543 ttgcaatttggagagagatagacacaaaa-aataagtgatgggtcctatcactaagtgggtcccaccatcattaattattttttacttttt 26749632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 27490066 - 27490156
Alignment:
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    ||||||||||||| |||||||||||| || | ||| ||| | | | ||||| ||||||| |||||| ||||| |||||||||| |||||||    
T  27490066 tatcattaattatattttacttttttcaagattttatgtatttttgtctcttcaaatggaagaaattgagaaagacataaatggagaagat 27490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 470
Target Start/End: Original strand, 24557216 - 24557266
Alignment:
Q  420 ggtcctaccattaagtgaatcctattatcattaattatgttttactttttt 470  Q
    |||||||||||||||||| ||| || |||||||||||  ||||||||||||    
T  24557216 ggtcctaccattaagtgagtcccatcatcattaattactttttactttttt 24557266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 5033366 - 5033310
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagac 401  Q
    |||||||| || |||||  ||||||||| ||||||||||| ||||||| ||||||||    
T  5033366 aagatcctttccatttggcaaaataaatggagttttgcaagttggagagagatagac 5033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 470
Target Start/End: Complemental strand, 6399989 - 6399914
Alignment:
Q  394 agatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttactttttt 470  Q
    |||||||||||||| |||||||| | |||| ||  |  ||||| |||| ||||||||||||||| ||||||||||||    
T  6399989 agatagacacaaaa-aatagatggtgggtcttattaccaagtggatcccattatcattaattattttttactttttt 6399914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 21492766 - 21492730
Alignment:
Q  477 tttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  21492766 tttgtgtgtctttatctctccaaatggaagaaatgga 21492730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 344 - 544
Target Start/End: Complemental strand, 33450622 - 33450422
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||| |||| ||||||  ||| |    
T  33450622 taagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtccca 33450523  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33450522 tcatcattaattattttttatttttttcaaaattttgtgtgtttatatctctccaaatggtagaaatggagaaggacataaatgaagaggattttgaccc 33450423  T
Q  544 g 544  Q
    |    
T  33450422 g 33450422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 344 - 543
Target Start/End: Original strand, 47500242 - 47500441
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||  |||||||||| |||||||| |||||||||| ||||||||||||||||||||||| | ||||| |||| ||||||  ||| |    
T  47500242 taagatcctctccatttactaaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtccca 47500341  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||||||||||| ||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||    
T  47500342 tcatcattaattattttttatttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggattttgaccc 47500441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 348 - 542
Target Start/End: Original strand, 34985909 - 34986102
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattat 447  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||  |||| ||| ||| ||| || ||    
T  34985909 atcctctcaatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatgagtcccatcat 34986008  T
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacc 542  Q
    |||||||||| ||||| ||||||  ||| ||| | |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  34986009 cattaattattttttattttttttcaaaattt-tatgtctatatctctccaaatggtagaaatggagaaagacataaatggagaggattttgacc 34986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 45260388 - 45260568
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||  | | |||||||| |||||| |||| ||    
T  45260388 aagatcctctccatttggcaaaataaattgagttttgcaagttggagagagatagacacaaaa-aatagattgtggatcctaccactaagtggatcccat 45260486  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaat 526  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  ||||||||    
T  45260487 catcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaat 45260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 21151266 - 21151085
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||| | ||||||||   | |||||||| ||||||  ||| |     
T  21151266 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggaggatcctaccactaagtgggtcccac 21151168  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  21151167 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 21151085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 9559015 - 9559185
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||| | |||||||||| ||||||  ||| |     
T  9559015 aagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 9559113  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||||| |||||| |||||    
T  9559114 catcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaa 9559185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 345 - 531
Target Start/End: Complemental strand, 4888581 - 4888396
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||  | |||||||||| |||||   ||| |     
T  4888581 aagatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaa-aatagatagtgggtcctaccactaagtaggtcccac 4888483  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
     |||||||||||| |||||  ||||| || | ||| ||||||| ||||||||||||||| |||||| |||||  |||||||||||||    
T  4888482 catcattaattatattttatgttttttaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacataaatgaaga 4888396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 351 - 533
Target Start/End: Complemental strand, 7362676 - 7362495
Alignment:
Q  351 ctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcat 450  Q
    ||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||| ||||| ||| ||  | | |  |||||    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaa-aatagatggtgggtcgtaccactaaatgggttccaccatcat 7362578  T
Q  451 taattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaag 533  Q
    ||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  ||||||||| |||||    
T  7362577 taattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaag 7362495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 16366632 - 16366451
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||| || | |||||||| | | |||||||| ||||||  ||| |     
T  16366632 aagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataaga-aatagatggtggatcctaccactaagtgtgtcccac 16366534  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | |||  |||| | ||||||||||||| | ||||||||||||  |||||||||    
T  16366533 catcattaattatattttacttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaaacacataaatg 16366451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 18198370 - 18198189
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| | |||||||||||| |||||||| | ||| || ||| ||||||| ||| |     
T  18198370 aagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaa-aatagatggtgggttctgccactaagtgagtcccac 18198272  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| ||||| |||||| || | ||| ||||  | ||||||| ||||| | ||||||||||||  |||||||||    
T  18198271 catcattaattatattttatttttttcaagattttatgtgattttatctctacaaattgaagaaatggagaaacacataaatg 18198189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 12139422 - 12139261
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagt-gaatcctattatcattaattatgtttt 462  Q
    |||||||||  |||||||||| ||||||| |||||||||||||| |||||||| | |||||||||||||||| |  ||| |  |||||||||||| ||||    
T  12139422 aaaataaatgaagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccattaagtggggtcccaccatcattaattatatttt 12139324  T
Q  463 acttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||| || | ||| ||||  | ||||||||||||| | ||||||||||||  |||||||||    
T  12139323 actttttttaagattttatgtg--tttatctctccaaattgaagaaatggagaaacacataaatg 12139261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 25084708 - 25084870
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    |||| ||||| ||||||| || ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |  |||||||||||| |||||    
T  25084708 aaaaaaaataaagttttgtaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 25084806  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||| |||| ||| ||||||| ||||||| |||||   | ||||||||||  |||||||||    
T  25084807 tttttttcaaaattttatgtgtctttatctcttcaaattaaaaaaatggagaaacacataaatg 25084870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 347 - 527
Target Start/End: Complemental strand, 32916067 - 32915892
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctatta 446  Q
    |||||| ||| |||| |||||||||| |||  | |||||||| ||| |||||||||||||| |||| ||  | |||||||||||||||||| ||| |  |    
T  32916067 gatcctttctgtttggtaaaataaatggaggat-gcaatttgaagagagatagacacaaaa-aataaatagtgggtcctaccattaagtgagtcccacca 32915970  T
Q  447 tcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||| |||||| ||||   ||||| |||  ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  32915969 tcatgaattatatttt---tttttaaaacttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatg 32915892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 527
Target Start/End: Complemental strand, 29631156 - 29630981
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattat 447  Q
    |||||||| ||||| |||||||||| |||||| |||||||| |||  ||||||||||||| | |||||  | ||||| |||| || ||   ||| | |||    
T  29631156 atcctctccatttggtaaaataaatggagttt-gcaatttgaaga--gatagacacaaaaca-tagatagtgggtccaaccactatgtaggtcccactat 29631061  T
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||||||  ||||||||||| |||| ||| ||||||| ||| ||||||||||  |||||||||||| ||||| ||||    
T  29631060 cattaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaatggagaaagacatgaatg 29630981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 44648078 - 44648008
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||    
T  44648078 aagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatg 44648008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 47226037 - 47226215
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||| |||||||| |||  ||| | ||||| |||| ||| ||  ||| |     
T  47226037 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaa-aat--atggtgggtcccaccactaaatgggtcccac 47226133  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||  || | ||| ||||| | ||||||||||||| | |||||| |||||  |||||||||    
T  47226134 catcattaattatattttactttttccaagattttatgtgt-tttatctctccaaattgaagaaatagagaaacacataaatg 47226215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 531
Target Start/End: Original strand, 44565577 - 44565662
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
    |||||||||||| |||| ||||||| |||| ||||| | ||||||||||| ||||| ||| ||||| |||| | ||||||||||||    
T  44565577 atcattaattattttttgctttttttaaaattttgtatatctatatctctgcaaatagtaaaaatgaagaatggcataaatgaaga 44565662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 515
Target Start/End: Original strand, 33608845 - 33609007
Alignment:
Q  352 tctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcatt 451  Q
    |||| ||||| |||||||||| |||||| |||||||||||| ||||| |||||||| ||||||||  || | |||| |  | |||| | | |  ||||||    
T  33608845 tctccatttggtaaaataaatggagttt-gcaatttggagagagataaacacaaaaaaatagatggaagatactactaccaggtgagttccaccatcatt 33608943  T
Q  452 aattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    |||||| || ||||||||| ||||   | ||| ||| ||||| ||||||||| |||||||||||    
T  33608944 aattattttatacttttttaaaaaaaatttgtatctttatctttccaaatggaagaaatggaga 33609007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 47799895 - 47799984
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| |||||||||||||| ||||  |||| ||||||| || ||||||  ||| |  |||||||||||| |||||||||||    
T  47799895 ttgcaatttggagagagatagacacaaaa-aataagtgatgggtcctatcactaagtgggtcccaccatcattaattattttttacttttt 47799984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 6568420 - 6568456
Alignment:
Q  477 tttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6568420 tttgtgtgtctttatctctccaaatggtagaaatgga 6568456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 39855807 - 39855898
Alignment:
Q  378 tttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttactttttt 470  Q
    |||| |||||||||| ||||||||||| || || ||||| | |||||||||| ||||||  ||| || |||||||||||  ||||||||||||    
T  39855807 tttgtaatttggagagagatagacacataaaaa-agatggtcggtcctaccactaagtgggtcccatcatcattaattaaattttactttttt 39855898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 515
Target Start/End: Original strand, 5463966 - 5464033
Alignment:
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    |||||||||  ||||| ||||| ||||  ||||||||||||||||||||||||||   ||||||||||    
T  5463966 cattaattactttttagtttttcgaaatttttgtgtgtctatatctctccaaatgaatgaaatggaga 5464033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 47271109 - 47271170
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||||| ||||   ||||||||| |||||| |||||||||||| ||||||||||||||    
T  47271109 aagatcctctccatttagcaaaataaatggagttt-gcaatttggagagagatagacacaaaa 47271170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 47270661 - 47270580
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccat 430  Q
    ||||||||||||||| |||||||||| || ||   |||||| |||| ||||||||||| |  ||||||| ||||| ||||||||    
T  47270661 gatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacata--aatagataataggccctaccat 47270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 345 - 543
Target Start/End: Original strand, 227524 - 227722
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |||||| |||| ||    
T  227524 aagatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcccat 227623  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
     |||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  227624 catcattgattattttttacctttttcaaaactttgtgtgtctatatctctccaaattgtagaaatggagaagcacataaatgaagaggattttgaccc 227722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 4804562 - 4804392
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  4804562 aagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 4804464  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | ||||||||||||    
T  4804463 catcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 4804392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 344 - 540
Target Start/End: Original strand, 13888482 - 13888668
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | | |||||||||||| ||  ||| |    
T  13888482 taagatcctctcaatatgctaaaataaatagagttttgcaatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtccca 13888581  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttga 540  Q
    | |||||||||||| |||||||  |    || |      ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  13888582 tcatcattaattattttttactaat----aagc------tgtctatatctctccaaatggtagaaatgaagaaggacataaatggagaggattttga 13888668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 345 - 513
Target Start/End: Original strand, 21159330 - 21159497
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||||| | |||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  21159330 aagatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 21159428  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||| ||||||||| | |||||||||    
T  21159429 catcattaattatattttacttttttcaagattttatgtgtctttatatctccaaattgaagaaatgga 21159497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 7162198 - 7162028
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| | |||||||| | ||||||  ||| |     
T  7162198 aagatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggtgggtcctactactaagtgggtcccac 7162100  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||    
T  7162099 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 7162028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 17944276 - 17944106
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||  |||||  ||||||||| |||||||| || ||||||| |||||||||||||| |||||||| |||||||||||| ||| ||  ||| |     
T  17944276 aagatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaa-aatagatggtaggtcctaccactaaatgggtcccac 17944178  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||  || | ||| ||||| | ||||||||||||| | ||||||||||||    
T  17944177 catcattaattatattttactttttccaagattttatgtgtttttatctctccaaattgaagaaatggagaa 17944106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 515
Target Start/End: Complemental strand, 12412751 - 12412582
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| | |||||||||| ||||||  | | |     
T  12412751 aagatcttctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggtgggtcctaccactaagtgggttccac 12412653  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
     |||||||||||| |||||||||||| |||| ||| ||| | | ||||||||||||| | |||||||||||    
T  12412652 catcattaattatattttacttttttcaaaattttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 1249109 - 1249288
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| |||||||| || ||||||| ||| ||||| ||||   |||||| | |||||||||| ||||||  ||| |     
T  1249109 aagatcctctccatttggcaaaataaatggagttttgtaagttggagagagacagacaaaaaa---tagatggtgggtcctaccactaagtgggtcccac 1249205  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||| ||||||| | ||||||||||||  |||||||||    
T  1249206 catcattaattatattttacttttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatg 1249288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 27826652 - 27826471
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||| |  || |||||||  | |||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  27826652 aagatcctctccatttggtaaaataactgaagatttgcaaggttgagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 27826554  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| ||||| |||||  ||   ||| ||||||| |||||||| |||||| |||||| |||||  |||||||||    
T  27826553 catcattaattatattttattttttaaaattttttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatg 27826471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 485
Target Start/End: Original strand, 13089710 - 13089849
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| | ||||||||| ||||||| ||||||||||||||  ||||||| | |||||||||| ||||||   || |     
T  13089710 aagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaa-tatagatggtgggtcctaccactaagtgggccccac 13089808  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgt 485  Q
     |||||||||||| ||||| |||||| |||| ||| |||||    
T  13089809 catcattaattatattttatttttttcaaaattttatgtgt 13089849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 515
Target Start/End: Original strand, 17828564 - 17828698
Alignment:
Q  380 tgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaacttt 479  Q
    ||||||||||||| ||||||||||| || |||||||  | | | |||| |||||||| |||| || |||| ||||||  ||||| ||||||||||  |||    
T  17828564 tgcaatttggagagagatagacacataa-aatagatagtggattctactattaagtggatcccatcatcaataattaatttttagttttttgaaattttt 17828662  T
Q  480 gtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    ||||||||||||| |||||||||   ||||||||||    
T  17828663 gtgtgtctatatcactccaaatgaatgaaatggaga 17828698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 527
Target Start/End: Complemental strand, 29698214 - 29698096
Alignment:
Q  409 aatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaa 508  Q
    |||||||| | | |||||||||||||||  ||| |  |||||||||||| |||||||||||| || | ||| ||||||| ||| ||||||||| | ||||    
T  29698214 aatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatttctccaaattgaagaa 29698115  T
Q  509 atggagaaggacataaatg 527  Q
    ||||||||  |||||||||    
T  29698114 atggagaaacacataaatg 29698096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 516
Target Start/End: Complemental strand, 32737888 - 32737818
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | ||||||||||||    
T  32737888 atcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 32737818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 465 - 541
Target Start/End: Original strand, 31708273 - 31708349
Alignment:
Q  465 ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    |||||| |||| ||||||||||||||||||| |||||| |||||||||||||  |||||||| |||| ||| |||||    
T  31708273 ttttttaaaaattttgtgtgtctatatctcttcaaatgatagaaatggagaaaaacataaataaagaggatcttgac 31708349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 32737971 - 32737901
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    ||||||||||| |||||  ||||||||||||||||||||  ||||||| |||||||||||||| ||||||||    
T  32737971 aagatcctctccatttggcaaaataaatagagttttgcaggttggagagagatagacacaaaa-aatagatg 32737901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 521
Target Start/End: Complemental strand, 30460918 - 30460759
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcc----taccattaagtgaatcctattatcattaattatgt 459  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| | ||| |||| | |||    ||||||||| ||| |||     | ||||||||| |    
T  30460918 aaaataaatggagttt-gcaatttggagaaagatagacacaaaa-agtagttgatggatccatcctaccattaaatgagtcccgccgttattaattatat 30460821  T
Q  460 tttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggaca 521  Q
    ||||||||||| || | ||| ||||||| ||||||||||||| | ||||||| |||| ||||    
T  30460820 tttacttttttcaagattttatgtgtctttatctctccaaatagaagaaatgaagaaagaca 30460759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 348 - 515
Target Start/End: Original strand, 7215816 - 7215981
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattat 447  Q
    |||||||| ||||| |||||||||| ||  |   ||||||||||| ||||||||||| || |||||||  | |||||||||| ||| ||  ||| | |||    
T  7215816 atcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataa-aatagatagtgggtcctaccactaattgggtcccactat 7215914  T
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    ||||||||| ||||||||||||  || |   | || |||||||||||||||||| | |||||||||||    
T  7215915 cattaattacgttttactttttctaagaaaatttgagtctatatctctccaaat-gaagaaatggaga 7215981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 515
Target Start/End: Original strand, 2800609 - 2800740
Alignment:
Q  382 caatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgt 481  Q
    ||||||||||| ||||||||||| || |||||||  | | || ||||||||||||  ||| |  |||||| ||||| |||||||||||| ||   ||| |    
T  2800609 caatttggagagagatagacacataa-aatagatagtggatcataccattaagtgggtcccaccatcattgattattttttacttttttcaatttttttt 2800707  T
Q  482 gtgtctatatctctccaaatggtagaaatggaga 515  Q
    | || ||||||||||||||||| |||||||||||    
T  2800708 gagtttatatctctccaaatgg-agaaatggaga 2800740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 541
Target Start/End: Original strand, 2142379 - 2142439
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    ||||||| |||||||| ||||||  |||||||||| ||| ||||||| |||||||||||||    
T  2142379 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 2142439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 469
Target Start/End: Complemental strand, 24484959 - 24484870
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| |||||||||||||| ||||  || | ||||||| || ||||||  ||| |  |||||||||||| |||||||||||    
T  24484959 ttgcaatttggagagagatagacacaaaa-aataagtggtgggtcctatcactaagtgggtcccaccatcattaattattttttacttttt 24484870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 515
Target Start/End: Original strand, 28696701 - 28696770
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    |||||||||||| || | ||||||  |||  ||| ||||||| |||||||||||||| ||||||||||||    
T  28696701 atcattaattattttattctttttctaaacttttttgtgtctttatctctccaaatgatagaaatggaga 28696770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 344 - 543
Target Start/End: Complemental strand, 48084935 - 48084736
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||||| |||| ||||||  ||| |    
T  48084935 taagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtccca 48084836  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  48084835 tcatcattaattattttttatttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagaggattttgaccc 48084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 27033765 - 27033595
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| | |||||||||| |||||| |||| |     
T  27033765 aagatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggtgggtcctaccactaagtggatcccac 27033667  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||    
T  27033666 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 27033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 348 - 531
Target Start/End: Complemental strand, 2230094 - 2229912
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattat 447  Q
    |||||||| |||||  ||||||| | ||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||| ||||||  | | |  ||    
T  2230094 atcctctccatttggcaaaataattggagttttgcaagttggagagagatagacacaaaa-aatagatgatgggtcctaccactaagtggtttccaccat 2229996  T
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
    |||||||||| |||||||||||| |||| ||| ||||||| |||||||||||||   |||||| |||||  |||||||||||||    
T  2229995 cattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaaacacataaatgaaga 2229912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 40851888 - 40851706
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| |||||||||||||||||||||| |||||||| | ||| | |||| ||||||  |||||     
T  40851888 aagatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaa-aatagatggtgggttcaaccactaagtgggtcctac 40851790  T
Q  445 tatcatt-aattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||| ||| || |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  40851789 catcattaaatcatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatg 40851706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 345 - 535
Target Start/End: Original strand, 43719908 - 43720097
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||   ||||||||| ||||||||||| ||||||| |||||||||||||| |||| ||  | |||||||||| ||||||  ||| |     
T  43719908 aagatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaa-aataaattgtgggtcctaccactaagtgggtcccac 43720006  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  ||||||||| |||||||    
T  43720007 catcattaattatattttattttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagat 43720097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 513
Target Start/End: Original strand, 19830392 - 19830560
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| |||| || | |||||||||||| |||||||| | |||||||||||||||||  ||| |     
T  19830392 aagatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaa-aatagatggtgggtcctaccattaagtgggtcccac 19830490  T
Q  445 tatcattaattatgtttta-cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
     |||||||||||| ||||| ||||||| || | ||| ||||||| ||||||||||||| | |||||||||    
T  19830491 catcattaattatattttaccttttttaaagattttatgtgtctttatctctccaaattgaagaaatgga 19830560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 550797 - 550958
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| |||||| |||||||||||||||||| | |||||| |||||||| | | ||||| |||||||||  ||| |  || |||| |||| |||||    
T  550797 aaaataaatggagttt-gcaatttggagaaagatatatacaaaa-aatagatggtggatcctatcattaagtgggtcccaccattattatttatatttta 550894  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||| |||| ||| ||| ||| ||||||||||||||| |||||||||||| ||||||||||    
T  550895 cttttttaaaaattttatgtatctttatctctccaaatggaagaaatggagaaagacataaatg 550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 382 - 543
Target Start/End: Original strand, 40810353 - 40810513
Alignment:
Q  382 caatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgt 481  Q
    ||||||||||| ||||| ||| ||||||||||||| | ||||  |||| ||||||  ||| || |||||||||||| ||||| ||||||  ||| ||| |    
T  40810353 caatttggagagagataaacaaaaaagaatagatggtgggtctaaccactaagtgggtcccatcatcattaattattttttattttttttcaaaattt-t 40810451  T
Q  482 gtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    |||| ||||||||||| |||| |||||||||| || |||||||||| ||| |||||||||||    
T  40810452 gtgtttatatctctcctaatgatagaaatggaaaaagacataaatggagaggattttgaccc 40810513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 34373565 - 34373727
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||||||||||||||| ||  | | |||||||||| ||| |||||||| | |||||||||| ||||||  ||| |  |||||||||||| |||||    
T  34373565 aaaataaatagagttttgcaagttccatagagatagacactaaa-aatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 34373663  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||| || | ||| ||| ||| ||||||||||||| | ||||||||||||  |||||||||    
T  34373664 cttttttcaagattttttgtctctttatctctccaaattgaagaaatggagaaacacataaatg 34373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 345 - 501
Target Start/End: Complemental strand, 34373945 - 34373790
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||| ||||| |||||  ||||||||| | ||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||| |   ||| |     
T  34373945 aagattctctccatttggcaaaataaattgtgttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaattaggtcccac 34373847  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
     |||||||||||| |||||||||||| || | ||| ||||||| |||||||||||||    
T  34373846 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaat 34373790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 46167488 - 46167326
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| |||||||| || ||||||| |||||||||||||| |||| ||| | |||||||||| |||||| ||||||  || ||||||||| |||||    
T  46167488 aaaataaatggagttttgtaagttggagagagatagacacaaaa-aatatatggtgggtcctaccactaagtggatcctaccattattaattatatttta 46167390  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||| || | | | | ||||| |||||||| |||| | ||||||||| ||  |||||||||    
T  46167389 cttttttcaagattatatttgtctttatctctctaaattgaagaaatggaaaaacacataaatg 46167326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 501
Target Start/End: Original strand, 10474402 - 10474554
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctatta 446  Q
    |||||||||||||||  | ||||||| |||| | ||||||| |||| | ||||||||| || ||||||| || | |||||| ||||||||| | | |  |    
T  10474402 gatcctctctatttgacataataaatggagtat-gcaattttgagagatatagacacataa-aatagataatggatcctactattaagtgagttccacca 10474499  T
Q  447 tcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
     |||||||||  ||||| ||||||||||  |||||||||||||||||||||||||    
T  10474500 acattaattactttttagttttttgaaatttttgtgtgtctatatctctccaaat 10474554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 531
Target Start/End: Original strand, 52859441 - 52859527
Alignment:
Q  446 atcattaattatgttttact-tttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
    |||||||||||| ||||||| ||||| || | ||| ||||| | ||| |||||||||||||||||||||||| ||||||||||||||    
T  52859441 atcattaattatattttactcttttttaagattttatgtgtatttatttctccaaatggtagaaatggagaaagacataaatgaaga 52859527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 24754771 - 24754681
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtg 436  Q
    ||||||||||| |||||  ||||||||| ||||||| ||| ||||||| ||||||||||| || |||||||| || ||||||||| ||||||    
T  24754771 aagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaa-aatagatggtatgtcctaccactaagtg 24754681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 24763768 - 24763678
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtg 436  Q
    ||||||||||| |||||  ||||||||| ||||||| ||| ||||||| ||||||||||| || |||||||| || ||||||||| ||||||    
T  24763768 aagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaa-aatagatggtatgtcctaccactaagtg 24763678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 12403061 - 12402924
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||||||||||||||| ||||||| ||||||| | |||| | |||||| | | | |||||| ||||||| ||| |  || ||||||||| |||||    
T  12403061 aaaataaatagagttttgcaagttggagagagatagatataaaa-attagatggtggattctaccactaagtgagtcccaccattattaattatatttta 12402963  T
Q  464 c-ttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
    | |||||| || | ||| ||||||| |||||||||||||    
T  12402962 cttttttttaagattttatgtgtctttatctctccaaat 12402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 510
Target Start/End: Complemental strand, 2310337 - 2310261
Alignment:
Q  432 aagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaat 510  Q
    |||||||||| || |||||||||||| ||||||||| || ||||  || ||||||| |||||||| |||||| ||||||    
T  2310337 aagtgaatcccatcatcattaattattttttactttctttaaaa--ttttgtgtctttatctctctaaatggaagaaat 2310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 516
Target Start/End: Original strand, 20485814 - 20485849
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20485814 tgtgtttatatctctccaaatggtagaaatggagaa 20485849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 514
Target Start/End: Complemental strand, 20485748 - 20485715
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggag 514  Q
    ||||||||||||||||||||||||| ||||||||    
T  20485748 tgtgtctatatctctccaaatggtaaaaatggag 20485715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 344 - 544
Target Start/End: Original strand, 47922326 - 47922526
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||| | |||||||||| ||||||  ||| |    
T  47922326 taagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtccca 47922425  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||  ||||||| |||||||||||| |||||||||||||| |||||| || ||||||||||||||||| || || ||||||| ||| |||||||||||    
T  47922426 tcatctataattattttttacttttttcaaaactttgtgtgtttatatcactacaaatggtagaaatggataaagaaataaatggagaggattttgaccc 47922525  T
Q  544 g 544  Q
    |    
T  47922526 g 47922526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 19901879 - 19902060
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  19901879 aagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 19901977  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | |||||| |||||  |||||||||    
T  19901978 catcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatg 19902060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 56558393 - 56558223
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | ||||||| || ||||||  ||| |     
T  56558393 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctatcactaagtgggtcccac 56558295  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | |||||| |||||    
T  56558294 catcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaa 56558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 5763123 - 5763293
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  |||||| || ||||||| ||| ||||||| ||||||| |||||| |||||||| | |||||||||| ||||||  ||| |     
T  5763123 aagatcctctcaatttggcaaaatatatggagttttacaagttggagagagatagaaacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 5763221  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | ||||||||||||    
T  5763222 catcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 5763293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 23610756 - 23610586
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||| ||||| ||||||  ||| |     
T  23610756 aagatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcataccactaagtgggtcccac 23610658  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||| ||| |||||||||||| || | ||| ||| ||| ||||||||||||| | ||||||||||||    
T  23610657 catcattaaatatattttacttttttcaagattttatgtatctttatctctccaaattgaagaaatggagaa 23610586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 536
Target Start/End: Complemental strand, 34778535 - 34778345
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||| ||| |||||||||||||| |||||||| | | |||||||| ||||||  ||| |     
T  34778535 aagatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaa-aatagatggtggatcctaccactaagtgggtcccac 34778437  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagatt 536  Q
     |||||||||||| |||||||||||| || | ||| ||||||| |||||||||| || | ||||||||||||  ||||||||| ||| ||||    
T  34778436 catcattaattatattttacttttttcaagattttatgtgtctttatctctccacattgaagaaatggagaaacacataaatggagaggatt 34778345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 3952131 - 3952301
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| |||||| |||| ||||||| ||||||||| |||| |||||||| | |||||||||| ||||||  ||  |     
T  3952131 aagatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaa-aatagatggtgggtcctaccactaagtgggtctcac 3952229  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||    
T  3952230 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 3952301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 345 - 531
Target Start/End: Complemental strand, 39862631 - 39862446
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| ||||||||||||| |||||||| || |||| |||||||||||||| |||||||| |  |||||| || ||| ||| | | |     
T  39862631 aagatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaa-aatagatggtgtgtcctatcactaaatgagttccac 39862533  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | |||||  |||||  |||||||||||||    
T  39862532 catcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaaatgagaaacacataaatgaaga 39862446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 446 - 541
Target Start/End: Original strand, 31862281 - 31862376
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    |||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||  ||| |||||||||    
T  31862281 atcattaattattttttactttttctaaaattttgtgtgtctatatctctccaaatggtagaaatagagaaggatataaattgagaggattttgac 31862376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 18207001 - 18207182
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  |||||||||  |||||||||| || |||| ||||||||| |||| |||||||| | |||||||||| ||||||  ||| ||    
T  18207001 aagatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaa-aatagatggtgggtcctaccactaagtgggtcccat 18207099  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||| ||||| || | ||| ||||||| ||||| ||||||| | |||||| |||||  |||||||||    
T  18207100 catcattaattatattttacctttttcaagattttatgtgtctttatctttccaaattgaagaaattgagaaacacataaatg 18207182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 453 - 527
Target Start/End: Complemental strand, 26428650 - 26428576
Alignment:
Q  453 attatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26428650 attattttttacttttttcaaaaatttgtgtgtctatatctctccaaattgtagaaatggagaaggacataaatg 26428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 33262513 - 33262694
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||||||||||||||  ||||||||| | ||||||||| || |||| |||||||||||||| |||||||| | | |||||||| ||| |   ||| |     
T  33262513 aagatcctctctatttggcaaaataaattgtgttttgcaagttagagagagatagacacaaaa-aatagatggtggatcctaccactaaataggtcccac 33262611  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | |||||| || ||  |||||||||    
T  33262612 catcattaattatattttactttttttaaaattttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaatg 33262694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 5416427 - 5416608
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||  |||||||  | |||||||||| ||||||  ||| |     
T  5416427 aagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaa--aatagattgtgggtcctaccactaagtgggtcccac 5416524  T
Q  445 tatcattaattatgttttac--ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaat 526  Q
     |||||||||||| ||||||  |||||| || | ||| ||||||| ||||| ||||||| | ||||||||||||  ||||||||    
T  5416525 catcattaattatattttacttttttttaaagattttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaat 5416608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 345 - 467
Target Start/End: Original strand, 12312436 - 12312558
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||| |||| |||||||| | | |||||||| ||||||  ||| ||    
T  12312436 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtcccat 12312535  T
Q  445 tatcattaattatgttttacttt 467  Q
     |||||||||||| |||||||||    
T  12312536 catcattaattatattttacttt 12312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 364 - 493
Target Start/End: Complemental strand, 30567996 - 30567868
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||| |||||||| | |||||||||| ||||||  | | || |||||||||||| |||||    
T  30567996 aaaataaatggagttttgcaagttgaagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggttccatcatcattaattatatttta 30567898  T
Q  464 cttttttgaaaactttgtgtgtctatatct 493  Q
    ||||||| |||| ||| ||||||| |||||    
T  30567897 cttttttcaaaattttatgtgtctttatct 30567868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 454 - 543
Target Start/End: Complemental strand, 34927100 - 34927011
Alignment:
Q  454 ttatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    |||| |||||| ||||| |||| |||| ||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  34927100 ttattttttacatttttcaaaaatttgcgtgtctataactctccaaattgtaaaaatgaagaaggacataaatgaagaagattttgaccc 34927011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 38079681 - 38079851
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||   ||||||||| ||||||||| | || |||| |||||||||||| | |||||||| | |||||||| | |||||| || | |     
T  38079681 aagatcctctccatttaacaaaataaatggagttttgctagtttgagagagatagacacaaga-aatagatggtgggtcctactactaagtggattccac 38079779  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | | ||||||||||    
T  38079780 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaa 38079851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 420 - 531
Target Start/End: Original strand, 12241443 - 12241554
Alignment:
Q  420 ggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaagga 519  Q
    |||||||||| ||||||  ||| |  |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |    
T  12241443 ggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaaca 12241542  T
Q  520 cataaatgaaga 531  Q
    ||||||||||||    
T  12241543 cataaatgaaga 12241554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 503
Target Start/End: Complemental strand, 23474190 - 23474068
Alignment:
Q  380 tgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaacttt 479  Q
    |||||||||| || ||||||||||| || |||||||| | |||||||| ||| ||||||||| |  |||||||||||  ||||| |||||||||   |||    
T  23474190 tgcaatttggggagagatagacacataa-aatagatggtgggtcctactattgagtgaatcccaccatcattaattactttttaattttttgaatttttt 23474092  T
Q  480 gtgtgtctatatctctccaaatgg 503  Q
    |||||| |||||||||||||||||    
T  23474091 gtgtgtttatatctctccaaatgg 23474068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 33247091 - 33247270
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| | ||| |||||| ||| ||  | | |     
T  33247091 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggtgggttctaccactaaatgggttccac 33247189  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| ||||| ||||||    | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  33247190 catcattaattatattttattttttt--cgattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 33247270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 34927596 - 34927510
Alignment:
Q  349 tcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagt 435  Q
    ||||||| ||||  |||||||||| | ||||||||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||    
T  34927596 tcctctccatttactaaaataaatggggttttgcaatttaaagagagatagacacaaaagaatagatggtgggtcctaccattaagt 34927510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 26429053 - 26428999
Alignment:
Q  375 agttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctacca 429  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  26429053 agttttgcaatttggagaaagatagacacaaaagaatagatggtgagtcctacca 26428999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 527
Target Start/End: Complemental strand, 12153185 - 12153104
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  12153185 atcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 12153104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 25442237 - 25442317
Alignment:
Q  448 cattaattatgtttta-cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||| ||||| ||||||| | || | ||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  25442237 cattaattattttttaactttttttataattgtgtgtgtctttatctctccaaatggaagaaatggagaaggccataaatg 25442317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 12153268 - 12153206
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  12153268 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa 12153206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 46804671 - 46804585
Alignment:
Q  420 ggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    |||||||||||||||||  ||| | ||||||||||||  |||||||||||||         ||||||| |||||||||||||||||||||||||||    
T  46804671 ggtcctaccattaagtgggtccaactatcattaattactttttacttttttg---------tgtgtctttatctctccaaatggtagaaatggaga 46804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 527
Target Start/End: Complemental strand, 52018795 - 52018716
Alignment:
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||| |||||||||||| || | ||| ||||| | ||||||||||||| | ||||||||||||  |||||||||    
T  52018795 cattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatg 52018716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 527
Target Start/End: Original strand, 12312571 - 12312645
Alignment:
Q  453 attatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||| |||||||||||| |||| ||| ||||||| |||||||| |||| | ||||||||||||  |||||||||    
T  12312571 attatattttacttttttcaaaattttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatg 12312645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 24073730 - 24073550
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||| | |||||  ||||||||| ||| |||| || ||||||| |||||||||||| | |||||||| | |||||||||| ||||||  |||       
T  24073730 aagatcctccccatttggcaaaataaatggagatttgtaagttggagagagatagacacaaca-aatagatggtgggtcctaccactaagtgggtcccgc 24073632  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| | ||  |||||| || | ||| |||| ||  |||||||||||||| |||||| |||||  |||||||||    
T  24073631 catcattaattatatatt-tttttttcaagattttatgtgccttcatctctccaaatggaagaaattgagaaacacataaatg 24073550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 56453816 - 56453904
Alignment:
Q  380 tgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||| |||||||||  ||| |  |||||| ||||| |||||||||||    
T  56453816 tgcaatttggagagagatagacacaaaa-aataggtggtgggtcctatcattaagtgggtcccaccatcattcattattttttacttttt 56453904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 541
Target Start/End: Original strand, 1015941 - 1016001
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    ||||||| |||||||| ||||||  |||||||||| ||| ||||||| |||||||||||||    
T  1015941 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 1016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 503
Target Start/End: Original strand, 42844167 - 42844305
Alignment:
Q  363 taaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttt 462  Q
    ||||||||||||||||   ||||||||||| ||||||||||| || ||||||   |  ||||||| ||||| || ||||    |||||||||||| ||||    
T  42844167 taaaataaatagagttaa-caatttggagatagatagacacataa-aatagagagtgtgtcctactattaaatggatccctccatcattaattatttttt 42844264  T
Q  463 acttttttgaaaactttgtgtgtctatatctctccaaatgg 503  Q
    |||||||| |||  ||| ||  |||||||||||||||||||    
T  42844265 actttttttaaacttttttgaatctatatctctccaaatgg 42844305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 53325369 - 53325421
Alignment:
Q  465 ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaag 517  Q
    |||||| |||| ||||||||| | ||||||||||||||||| |||||||||||    
T  53325369 ttttttcaaaattttgtgtgtttgtatctctccaaatggtaaaaatggagaag 53325421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 527
Target Start/End: Complemental strand, 3326528 - 3326449
Alignment:
Q  449 attaattatgttttacttttttgaaaactttgtgtgtc-tatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||||| |||||||||||| |||||||| | |||| | |||||||| ||||   |||||||||| ||||||||||||    
T  3326528 attaattattttttacttttttcaaaactttttttgtcttttatctctcaaaattaaagaaatggaggaggacataaatg 3326449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 47834570 - 47834504
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacccgttt 547  Q
    ||||||| ||||| || ||||||  |||||||||| ||| ||||||| ||||||||||||| |||||    
T  47834570 tgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaagattttgactcgttt 47834504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 52018877 - 52018815
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||||| ||||   ||||||||| ||||||||||| ||||||| ||||||| ||||||    
T  52018877 aagatcctctccatttagcaaaataaatggagttttgcaagttggagagagatagatacaaaa 52018815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 17080701 - 17080782
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||| ||||| |||||||||||  || | ||| | ||||| ||||||||||||| | ||||||||||||  |||||||||    
T  17080701 atcattcattatattttactttttccaagattttatctgtctttatctctccaaattgaagaaatggagaaacacataaatg 17080782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 541
Target Start/End: Complemental strand, 618881 - 618829
Alignment:
Q  489 tatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    |||||||| ||||||  |||||||||| ||| ||||||| |||||||||||||    
T  618881 tatctctctaaatggaggaaatggagagggaaataaatggagaagattttgac 618829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 33841768 - 33841827
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||| |||||||||| ||||| |||| |  ||||||||||| ||||||||||||||    
T  33841768 gatcctctccatttgttaaagtaaatggagtata-caatttggagagagatagacacaaaa 33841827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 483 - 515
Target Start/End: Complemental strand, 56564707 - 56564675
Alignment:
Q  483 tgtctatatctctccaaatggtagaaatggaga 515  Q
    ||||| |||||||||||||||||||||||||||    
T  56564707 tgtctttatctctccaaatggtagaaatggaga 56564675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 344 - 543
Target Start/End: Original strand, 18976264 - 18976460
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | | ||| ||||||||||   ||| |    
T  18976264 taagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggtccca 18976363  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    | |||||||||||| ||||| |||||| ||||  || ||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  18976364 tcatcattaattat-ttttatttttttcaaaa--ttttgtgtttatatctctccaaatggtagaaatgaagaaggacataaatggagaggattttgaccc 18976460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 50294024 - 50294194
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||  |||||  ||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||| | |||||||||| |||||| ||||||     
T  50294024 aagatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtggatcctac 50294122  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||||| |||||| |||||    
T  50294123 catcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaa 50294194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 50484500 - 50484319
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | ||| | |||| ||||||  ||| |     
T  50484500 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtacaaccactaagtgggtcccac 50484402  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
      ||||||||||| |||||||||||| || | ||| ||||||| |||||||||||||   ||||||||||||  |||||||||    
T  50484401 cgtcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatg 50484319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 12151881 - 12151700
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| |||||  ||||||||| ||||||||| | ||||||| ||| |||||||||| |||||||  | |||||||||| ||||||  ||| |     
T  12151881 aagatcttctccatttggcaaaataaatggagttttgccagttggagagagaaagacacaaaa-aatagattgtgggtcctaccactaagtgggtcccac 12151783  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | | ||||||||||  |||||||||    
T  12151782 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaataaatggagaaacacataaatg 12151700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 344 - 527
Target Start/End: Original strand, 1228500 - 1228670
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||  ||||  |||||||||| ||||||||||||||||||| ||| |||||||||||||||||          |||||| || ||  ||| |    
T  1228500 taagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacacaaaagaataga----------taccatcaaatg-gtccca 1228588  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    | | |||||||||| |||||||||||| |||||||  ||||||||||||| | |||| |||||||||||||||| || ||||||    
T  1228589 tcaacattaattattttttacttttttcaaaactt--tgtgtctatatctattcaaagggtagaaatggagaagaacgtaaatg 1228670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 527
Target Start/End: Original strand, 12380924 - 12381052
Alignment:
Q  398 agacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctcc 497  Q
    |||||||||| |||||||| | ||| |||||| ||||||| ||| |  |||||||||||| |||||||||||| || | ||| ||||||| |||||||||    
T  12380924 agacacaaaa-aatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctcc 12381022  T
Q  498 aaatggtagaaatggagaaggacataaatg 527  Q
    |||| | ||||||||||||  |||||||||    
T  12381023 aaattgaagaaatggagaaacacataaatg 12381052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 527
Target Start/End: Original strand, 12384991 - 12385119
Alignment:
Q  398 agacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctcc 497  Q
    |||||||||| |||||||| | ||| |||||| ||||||| ||| |  |||||||||||| |||||||||||| || | ||| ||||||| |||||||||    
T  12384991 agacacaaaa-aatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctcc 12385089  T
Q  498 aaatggtagaaatggagaaggacataaatg 527  Q
    |||| | ||||||||||||  |||||||||    
T  12385090 aaattgaagaaatggagaaacacataaatg 12385119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 45978119 - 45978049
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||    
T  45978119 aagatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaa-aatagatg 45978049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 536
Target Start/End: Original strand, 23861916 - 23862107
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgatag---gtcctaccattaagtgaatcctat 444  Q
    |||||||||||||   |||||||||  |||||||||| ||||||| |||||||||||||| |||||||| | |    |||||||| |||||| |||| |     
T  23861916 atcctctctatttagcaaaataaatgaagttttgcaagttggagagagatagacacaaaa-aatagatggtggtgaatcctaccactaagtggatcccac 23862014  T
Q  445 tatcattaattatgtttta-cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagatt 536  Q
     |||||||||||| |||||  |||||| || | ||| ||||||| ||||| ||||||| | |||||| |||||  |||| |||||||| ||||    
T  23862015 catcattaattatattttattttttttcaagattttatgtgtctttatctttccaaattgaagaaatagagaaacacatgaatgaagaggatt 23862107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 12380838 - 12380900
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  12380838 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa 12380900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 12384905 - 12384967
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  12384905 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa 12384967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 531
Target Start/End: Complemental strand, 40328389 - 40328205
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||  |||||||||||||  |||||||| | ||||| |||| ||||||  | | |     
T  40328389 aagatcctctccatttggcaaaataaatggagttttgcaaattggag--agatagacacaaa--aatagatggtgggtcccaccactaagtgggttccac 40328294  T
Q  445 tatcattaattatgttttac-ttttttgaaaactttgtgtgtc-tatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
     ||||||| |||| |||||| |||||| || | ||| |||||| | |||||||||||||   ||||||| ||||  |||||||||||||    
T  40328293 catcattagttatattttactttttttcaagattttatgtgtcttttatctctccaaattaaagaaatgaagaaacacataaatgaaga 40328205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 541
Target Start/End: Original strand, 46608438 - 46608528
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    |||||||||||| |||||||||||| |||||||  ||||||| ||| ||||||||||| ||||||||   |||||||||||| ||| ||| |||||    
T  46608438 atcattaattattttttacttttttcaaaactt--tgtgtctttatttctccaaatggaagaaatgg---aggacataaatggagaggatcttgac 46608528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 515
Target Start/End: Complemental strand, 39426287 - 39426156
Alignment:
Q  382 caatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgt 481  Q
    ||||||||||| ||||||||||| || |||||||  | |||||||||| ||| ||  ||| | ||||||||||||| |||||||||||  || |   | |    
T  39426287 caatttggagagagatagacacataa-aatagatagtgggtcctaccactaattgggtcccactatcattaattattttttactttttctaagaaaattt 39426189  T
Q  482 gtgtctatatctctccaaatggtagaaatggaga 515  Q
    | |||||||||||||||||||| |||||||||||    
T  39426188 gagtctatatctctccaaatgg-agaaatggaga 39426156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 541
Target Start/End: Complemental strand, 2845280 - 2845184
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaa-tggtagaaatggagaaggacataaatgaagaagattttgac 541  Q
    |||||||||||| ||||||| |||| |||| ||||||||| | |||||||||||| || ||||||| |||||  ||||||||| ||| ||| |||||    
T  2845280 atcattaattatattttactattttcaaaattttgtgtgtatttatctctccaaattgatagaaatagagaaaaacataaatggagaggatcttgac 2845184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 7840661 - 7840728
Alignment:
Q  366 aataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaag 434  Q
    ||||||| |||||||| || ||||||| |||||||||||| | |||||||||| |||||||||||||||    
T  7840661 aataaatggagttttgtaagttggagagagatagacacaaga-aatagatgatgggtcctaccattaag 7840728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 40988723 - 40988659
Alignment:
Q  452 aattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||||||| | | ||||||||||    
T  40988723 aattattttttacttttttcaaaattttgtgtgtctttatctctccaaatagaaaaaatggagaa 40988659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 45970860 - 45970804
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatg 502  Q
    |||||||||||| |||||||||||| |||| ||||||||||| ||||||| ||||||    
T  45970860 atcattaattattttttacttttttcaaaattttgtgtgtctttatctcttcaaatg 45970804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 7841771 - 7841838
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
    |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | |||||||||    
T  7841771 atcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatgga 7841838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 420 - 527
Target Start/End: Complemental strand, 44483807 - 44483701
Alignment:
Q  420 ggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaagga 519  Q
    |||||||||||||| || || | |  |||||||||||| ||||| ||||||  ||| || |||||||| ||||||| ||||||  ||||||||||||||     
T  44483807 ggtcctaccattaaatggattccaccatcattaattattttttattttttttcaaaatt-gtgtgtctttatctcttcaaatgcaagaaatggagaaggt 44483709  T
Q  520 cataaatg 527  Q
    ||||||||    
T  44483708 cataaatg 44483701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 30077639 - 30077728
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| |||||||||||||| ||||  || | ||| ||| || ||||||| ||| | ||||||||||||| |||||||||||    
T  30077639 ttgcaatttggagagagatagacacaaaa-aataagtggtgggttctatcactaagtgagtcccactatcattaattattttttacttttt 30077728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 527
Target Start/End: Complemental strand, 45978032 - 45977955
Alignment:
Q  450 ttaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||| ||||| |||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  45978032 ttaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 45977955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 470
Target Start/End: Original strand, 48327115 - 48327238
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| |||||  ||||||||| ||| ||||||| ||||||| ||||||||| |||| |||||||| |  ||||||||| ||||||  ||| |     
T  48327115 aagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacaaaaaa-aatagatggtgagtcctaccactaagtgggtcc-ac 48327212  T
Q  445 tatcattaattatgttttactttttt 470  Q
     |||||||||||| ||||| ||||||    
T  48327213 catcattaattatattttattttttt 48327238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 26860049 - 26860134
Alignment:
Q  383 aatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||| ||| ||||||||||| || |||||||  ||||||||| || |||||| |||| |  |||||||||||| |||||||||||    
T  26860049 aatttgaagagagatagacacataa-aatagatagtaggtcctatcactaagtggatcccacaatcattaattattttttacttttt 26860134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 52280034 - 52280123
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| ||||||||| |||| ||||  || | ||||||| || |||||| |||| |  |||||||||||| |||||||||||    
T  52280034 ttgcaatttggagagagatagacataaaa-aataagtggtgggtcctatcactaagtggatcccaccatcattaattattttttacttttt 52280123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 32361271 - 32361332
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaaga 409  Q
    |||||||| ||||| | |||||| |||||||||| || ||||||| |||| |||||||||||    
T  32361271 atcctctccatttggtgaaataattagagttttgtaagttggagagagatggacacaaaaga 32361332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 521
Target Start/End: Original strand, 42720817 - 42720893
Alignment:
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggaca 521  Q
    ||||||||| |||| || || |||||| |||||||| ||||||| |||||||| |||||  |||||||||||| ||||    
T  42720817 ttatcattatttattttgta-ttttttcaaaactttatgtgtctttatctctctaaatgaaagaaatggagaatgaca 42720893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 348 - 531
Target Start/End: Original strand, 4895699 - 4895881
Alignment:
Q  348 atcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattat 447  Q
    ||||||| ||||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |  ||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccaccat 4895797  T
Q  448 cattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
    |||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | ||||||||||||  | |||||||||||    
T  4895798 cattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatgaaga 4895881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 40753123 - 40753304
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||| |||| ||| | |||||||||| ||||||  ||| |     
T  40753123 aagatcctctctatttggcaaaataaataaagttttgcaagttggagaaagatagacacaaaa-aatatatggtgggtcctaccactaagtgggtcccac 40753221  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||  | |||||||||||||   ||||||||||||| |||||||||    
T  40753222 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatggagaagcacataaatg 40753304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 35660570 - 35660750
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  35660570 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 35660668  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaat 526  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||| ||||||  ||||||||    
T  35660669 catcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaacggagaaacacataaat 35660750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 345 - 544
Target Start/End: Complemental strand, 14349917 - 14349720
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||||||||| |||||||||| |||||||| || ||||||| ||| |||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  14349917 aagatcctctctatttggtaaaataaatggagttttgtaagttggagagagacagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 14349819  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacccg 544  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||| |||||||   ||||||||||||  ||||||||| ||||||| || |||||    
T  14349818 catcattaattatattttacttttttcaaga-tttatgtgtctttatctttccaaattaaagaaatggagaaacacataaatggagaagatcttaacccg 14349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 32129578 - 32129748
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| |||||||  || ||||||| |||||||||| ||| |||||||| | |||||||||| ||||||  ||| |     
T  32129578 aagatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaa-aatagatggtgggtcctaccactaagtgggtcccac 32129676  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||| | ||||||||||||    
T  32129677 catcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 32129748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 345 - 513
Target Start/End: Complemental strand, 37266845 - 37266678
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||| ||||| ||||||  ||| |     
T  37266845 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcataccactaagtgggtcccac 37266747  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatgga 513  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||| | |||||||||    
T  37266746 catcattaattatattttagttttttcaagattttatgtgtctttatctctccaaattgaagaaatgga 37266678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 11775907 - 11775725
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | | |||||||| ||||||  ||| |     
T  11775907 aagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtggatcctaccactaagtgggtcccac 11775809  T
Q  445 tatcattaattatgttttac-ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
      ||||||||||| |||||| |||||| || | ||| ||||| | ||||||||||||| | ||||||||||||  |||||||||    
T  11775808 cgtcattaattatattttactttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatg 11775725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 548
Target Start/End: Complemental strand, 13032232 - 13032031
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| |  ||||||||| ||| ||  ||| |     
T  13032232 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaga-aatagatggtgagtcctaccactaaatgggtcccac 13032134  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacccg 544  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  ||||||||| ||| |||  | |||||    
T  13032133 catcattaattatatttta-tttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaacccg 13032035  T
Q  545 tttt 548  Q
    ||||    
T  13032034 tttt 13032031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 544
Target Start/End: Original strand, 18625382 - 18625580
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||| ||||||| ||||||| ||| |||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  18625382 aagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 18625480  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacccg 544  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||||  |||||| || ||  ||||||||| ||| ||| || |||||    
T  18625481 catcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatgaaagaaattgaaaaacacataaatggagaggatcttcacccg 18625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 527
Target Start/End: Complemental strand, 39902525 - 39902348
Alignment:
Q  349 tcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatc 448  Q
    ||||||| |||||  ||||||||| ||||||| ||| ||||||| ||||| |||||| | |||||||| | |||||||||| ||| || || | |  |||    
T  39902525 tcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaaga-aatagatggtgggtcctaccactaaatggattccaccatc 39902427  T
Q  449 attaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  39902426 attaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 39902348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 378 - 535
Target Start/End: Original strand, 3057148 - 3057304
Alignment:
Q  378 tttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaact 477  Q
    ||||||||||||| | ||||| |||||||| |||||||| | | |||||||||||||||| ||  || |||||||||||| |||||||||||| |||| |    
T  3057148 tttgcaatttggatagagataaacacaaaa-aatagatggtggatcctaccattaagtgagtcacataatcattaattatattttacttttttaaaaaat 3057246  T
Q  478 ttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    ||  |||||| ||||||| ||||| | |||||||||||  ||||||| || |||||||    
T  3057247 ttaagtgtctttatctcttcaaatagaagaaatggagagagacataattggagaagat 3057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 509
Target Start/End: Complemental strand, 3057530 - 3057367
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||| ||||  |||||||||||||||||| ||||| ||||| ||||||||| |||| || ||||||| | ||||||||  |||||| | | |    
T  3057530 taagatcctctccattttgtaaaataaatagagtttt-caattcggagagagatagacaaaaaaaaa-agatgatggatcctaccacaaagtgagttcca 3057433  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaa 509  Q
    | |||||||||||| || ||||||||| |||  ||| ||||||| |||||||| |||||| |||||    
T  3057432 tcatcattaattattttatacttttttcaaacttttttgtgtctttatctctcaaaatggaagaaa 3057367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 43309222 - 43309160
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    |||||||||| |||||| |||||||||| ||||||||||| ||||||| ||||||||| ||||    
T  43309222 aagatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaa 43309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 34827287 - 34827152
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| ||||| ||||| ||||||| ||||||||| |||| |||||||| | | |||||||| ||||||  ||| |  ||| |||||||| |||||    
T  34827287 aaaataaatggagttatgcaagttggagagagatagacaaaaaa-aatagatggtggatcctaccactaagtgggtcccaccatctttaattatatttta 34827189  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
    |||||||  ||| ||| ||||||| ||||||| |||||    
T  34827188 ctttttttcaaaattt-tgtgtctttatctcttcaaat 34827152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 527
Target Start/End: Complemental strand, 10173958 - 10173881
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| |||||||||||| ||||     ||||||| ||||||||||||||   ||||||||||||||||||||||    
T  10173958 atcattaattattttttacttttttcaaaa----ttgtgtctttatctctccaaatgaaggaaatggagaaggacataaatg 10173881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 409 - 536
Target Start/End: Complemental strand, 4592851 - 4592725
Alignment:
Q  409 aatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaa 508  Q
    |||||||| | |||| ||||| ||||||  ||| |  |||||||||||| |||||||||||| || | ||| ||||| | ||||||||||||| | ||||    
T  4592851 aatagatggtgggtcttaccactaagtgggtcccaccatcattaattatattttacttttttcaatattttatgtgtat-tatctctccaaattgaagaa 4592753  T
Q  509 atggagaaggacataaatgaagaagatt 536  Q
    ||||||||  ||||||||| ||| ||||    
T  4592752 atggagaaacacataaatggagaggatt 4592725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 8440951 - 8441113
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| ||||||||||| ||||||  |||||||||| ||| |||||||| |  | | ||||| ||||||  ||| |  |||||||||||| |||||    
T  8440951 aaaataaatggagttttgcaagttggaggtagatagacaccaaa-aatagatggtgcgacataccactaagtgtgtcccaccatcattaattatatttta 8441049  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    ||||||| || | | | ||||| | ||||||||||||| |  |||| ||||||  |||||||||    
T  8441050 ctttttttaagattgtatgtgtatttatctctccaaattgatgaaacggagaaacacataaatg 8441113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 345 - 515
Target Start/End: Complemental strand, 29341108 - 29340942
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| ||||| || ||||||| |||| | |||||||||||| ||||||||||| || |||||||  | |||||||| ||||||||  ||| |     
T  29341108 aagatcctctccatttggtataataaatggagtat-gcaatttggagagagatagacacagaa-aatagatagtgggtcctactattaagtgggtcccac 29341011  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
     |||||||||||  | | | ||||| ||||  ||| ||| ||||||||||||||||||   ||||||||||    
T  29341010 catcattaattacttgtaagtttttcgaaa--tttttgtctctatatctctccaaatgaatgaaatggaga 29340942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Complemental strand, 36290682 - 36290593
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttacttttt 469  Q
    |||||||||||||| |||||||||||||| ||||  || | ||||||| || |||||| |||| |  |||||||||||| |||||||||||    
T  36290682 ttgcaatttggagagagatagacacaaaa-aataagtggtgggtcctatcactaagtggatcccaccatcattaattattttttacttttt 36290593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 531
Target Start/End: Original strand, 1475699 - 1475784
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaaga 531  Q
    |||||||||||| |||||||||||| || | ||| ||||||| |||| |||||||| | ||||||| | ||  |||||||||||||    
T  1475699 atcattaattatattttacttttttcaagattttatgtgtctttatcactccaaattgaagaaatgaaaaaacacataaatgaaga 1475784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 9460599 - 9460655
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacaca 404  Q
    ||||||||| ||||| |||||||||||||| | ||||||||||||| |||||||||||    
T  9460599 gatcctctccatttggtaaaataaatagag-tatgcaatttggagagagatagacaca 9460655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 23253772 - 23253737
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23253772 tgtgtctctatctctccaaatggtagaaatggagaa 23253737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 10242811 - 10242777
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggaga 515  Q
    ||||||| |||||||||||||||||||||||||||    
T  10242811 tgtgtctttatctctccaaatggtagaaatggaga 10242777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 437
Target Start/End: Complemental strand, 18653472 - 18653384
Alignment:
Q  347 gatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtga 437  Q
    ||||||||| | |||| ||||||||| |||||| |||||||| ||| |||||||||||||| |||||||  |  || ||||||||||||||    
T  18653472 gatcctctcaaattgtcaaaataaatggagttt-gcaatttgaagagagatagacacaaaa-aatagatagtgagttctaccattaagtga 18653384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 27428842 - 27428933
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtga 437  Q
    |||||||||||| |||| | ||||||||||||    ||||||||||| | |||||||||||||| |||||||| |   ||||||||||||||||    
T  27428842 taagatcctctccatttataaaaataaataga-agatgcaatttggaaagagatagacacaaaa-aatagatggtgaatcctaccattaagtga 27428933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 516
Target Start/End: Original strand, 38283826 - 38283867
Alignment:
Q  475 actttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||    
T  38283826 actttatgtgtctatatctctccaaattgtaaaaatggagaa 38283867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 28142812 - 28142860
Alignment:
Q  422 tcctaccattaagtgaatcctattatcattaattatgttttactttttt 470  Q
    |||||||||||||||| ||| |  |||||||||||| ||||||||||||    
T  28142812 tcctaccattaagtgagtcccaccatcattaattatattttactttttt 28142860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 208177 - 207996
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||| | |||||||||| ||||||  ||| ||    
T  208177 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaa-aatagatggtgggtcctaccactaagtgggtcccat 208079  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  208078 catcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 35316939 - 35316769
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | | |||||||| ||||||  ||| |     
T  35316939 aagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtggatcctaccactaagtgggtcccac 35316841  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| | ||||| ||||||||||||| | ||||||||||||    
T  35316840 catcattaattatattttacttttttcaagattttatatgtctttatctctccaaattgaagaaatggagaa 35316769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 28565006 - 28564824
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| |||||||  || ||| ||| |||||||||||||| |||||||| | |||||||||| ||||||  ||| |     
T  28565006 aagatcctctccatttggcaaaataaatggagttttttaagttgtagagagatagacacaaaa-aatagatggtgggtcctaccactaagtgggtcccac 28564908  T
Q  445 tatcattaattatgttttacttttttgaaa-actttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| |||||||||||| ||| | ||| ||||||| ||||||||||||| | ||||||||||||  |||||||||    
T  28564907 catcattaattatattttacttttttaaaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 28564824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 345 - 545
Target Start/End: Complemental strand, 13238795 - 13238596
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||| | ||||||||||  |||||  ||| |     
T  13238795 aagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctaccaccaagtgggtcccac 13238697  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgacccg 544  Q
     |||||||||||| ||||| |||||| || | ||| ||||||| ||||||||||||| | |||||| |||||   |||||||| ||| ||| || |||||    
T  13238696 catcattaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggatcttcacccg 13238597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 23259448 - 23259618
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||| |||||  ||||||||| | ||||||||| ||||||| |||||||||||||| ||||| || | |||||||| | |||||| |||| |     
T  23259448 aagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaa-aatagctggtgggtcctactactaagtggatcccac 23259546  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaa 516  Q
     |||||||||||| |||||||||||| || | ||| | ||||| |||| ||| |||| | ||||||| ||||    
T  23259547 catcattaattatattttactttttttaagattttatatgtctttatccctcaaaattgaagaaatgaagaa 23259618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 40640783 - 40640713
Alignment:
Q  346 agatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||    
T  40640783 agatcctctccatttgttaaaataaatggagttttgcaatttggagagagatatatacaaaagaatagatg 40640713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 344 - 543
Target Start/End: Complemental strand, 38824141 - 38823953
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    ||||||| |||||||||| |||||||||| |||||||| |||||||||| ||||||||| ||||||||| ||| | |||||   |||      ||||  |    
T  38824141 taagatcatctctatttgctaaaataaatggagttttgtaatttggagagagatagacaaaaaagaataaatggtgggtcc---cat------aatc--a 38824053  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagattttgaccc 543  Q
    ||||  ||  || | ||||  |||||| |||| ||||||||||||||||||| ||| |||| ||||||||||||||||| ||| |||| |||||| ||||    
T  38824052 ttatttttttttttattttttttttttcaaaattttgtgtgtctatatctcttcaagtggttgaaatggagaaggacatcaataaagaggattttcaccc 38823953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 2063468 - 2063398
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    |||||||||||  |||||  |||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  2063468 taagatcctcttcatttgacaaaataaatagagttt-gcaatttggagagagatagacacaaaa-aatagatg 2063398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 11864983 - 11864913
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatg 416  Q
    ||||||||||| |||| | ||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||||    
T  11864983 aagatcctctccatttatcaaaataaatggagttttacaagttggagagagatagacacaaaa-aatagatg 11864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 503
Target Start/End: Complemental strand, 30709187 - 30709066
Alignment:
Q  382 caatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttactt-ttttgaaaactttg 480  Q
    ||||||||||| ||||||||||| || |||||||  | |||||||||| |||||| |||| |  |||||||||| | |||||||| |||| |||  |||     
T  30709187 caatttggagagagatagacacataa-aatagatattgggtcctaccactaagtggatcccaccatcattaattgttttttactttttttcaaatttttt 30709089  T
Q  481 tgtgtctatatctctccaaatgg 503  Q
    || |||||||||| |||||||||    
T  30709088 tgagtctatatctttccaaatgg 30709066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 468
Target Start/End: Complemental strand, 8988935 - 8988847
Alignment:
Q  379 ttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttactttt 468  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||||| || ||||||  ||| |  |||||||||||| ||||| ||||    
T  8988935 ttgcaatttggagagagatagacacaaaa-aataagtgataggtcctatcactaagtgggtcccaccatcattaattattttttattttt 8988847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 527
Target Start/End: Complemental strand, 39465789 - 39465708
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| |||||||||||| || | ||| ||||| | ||||||||||||| | | ||||||||||  |||||||||    
T  39465789 atcattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatg 39465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 41983401 - 41983481
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| |||||||||||| || | ||| ||||||| |||||||||||||   ||||||||||||  |||||||||    
T  41983401 atcattaattatattttacttttttcaaga-tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatg 41983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 535
Target Start/End: Complemental strand, 12949482 - 12949395
Alignment:
Q  447 tcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    ||||||||||| |||||||||||| || | ||| ||| ||| ||||||||||||| | ||||| |||||| |||||| ||| |||||||    
T  12949482 tcattaattat-ttttacttttttcaagattttatgtatctttatctctccaaataggagaaacggagaaagacatagatggagaagat 12949395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 45625040 - 45625100
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaa 405  Q
    ||||||||||| |||||  ||||||||| ||||||| ||| ||||||| ||||||||||||    
T  45625040 aagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaa 45625100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 477
Target Start/End: Original strand, 21454475 - 21454586
Alignment:
Q  363 taaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttt 462  Q
    |||||||||| |||||| | ||||| |||| ||||||||||||||  ||||||  | |||| ||||||||||||  | | |  |||||||||||| ||||    
T  21454475 taaaataaatggagttt-gtaatttagagagagatagacacaaaa--atagattgtgggtcataccattaagtgggttccaccatcattaattatttttt 21454571  T
Q  463 acttttttgaaaact 477  Q
    |||||||| ||||||    
T  21454572 acttttttcaaaact 21454586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 503
Target Start/End: Complemental strand, 19908892 - 19908737
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    ||||||||||  ||||| || ||||||| |||| | ||||||||||| | |||||||||| || |||||||  |  |||||||  |||||||  ||| |     
T  19908892 aagatcctcttcatttgatataataaatggagtat-gcaatttggagga-gatagacacataa-aatagatagtgagtcctacttttaagtgggtcccac 19908796  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatgg 503  Q
     |||||||||||| ||||| | ||||||||  ||||||| |||||||||||| ||||||    
T  19908795 catcattaattattttttagtgttttgaaatttttgtgtatctatatctctctaaatgg 19908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 374499 - 374580
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| |||||||||||| || | ||| ||||| | |||||||| |||||  ||||| ||||||  |||||||||    
T  374499 atcattaattatattttacttttttcaagattttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaatg 374580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 30824157 - 30824121
Alignment:
Q  481 tgtgtctatatctctccaaatggtagaaatggagaag 517  Q
    |||||||||||||||| |||||| |||||||||||||    
T  30824157 tgtgtctatatctctctaaatggaagaaatggagaag 30824121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 364 - 526
Target Start/End: Original strand, 16377 - 16538
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||| |||| ||| | |||||||||| ||||||  ||| || |||||||||||| |||||    
T  16377 aaaataaatggagttttgcaagttggagagagatagacacaaaa-aataaatggtgggtcctaccactaagtgggtcccatcatcattaattatatttta 16475  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaat 526  Q
     |||||| || | ||| |||   | ||||||||||||| | ||||||||||||  ||||||||    
T  16476 tttttttcaagattttatgtaattttatctctccaaattgaagaaatggagaaacacataaat 16538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 365 - 527
Target Start/End: Complemental strand, 7241 - 7080
Alignment:
Q  365 aaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttac 464  Q
    |||||||| ||||||||||| ||||||| |||||||||||||| |||||||| | |||||||| ||||||||  | | |  |||||||||||| |||||     
T  7241 aaataaatggagttttgcaagttggagagagatagacacaaaa-aatagatggtgggtcctactattaagtgggttccaccatcattaattatattttat 7143  T
Q  465 ttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||| || | ||| | ||||| ||||||| ||||| | ||||||| ||||  |||||||||    
T  7142 ttttttcaagattttatatgtctttatctctgcaaattgaagaaatgaagaaacacataaatg 7080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 364 - 535
Target Start/End: Original strand, 22423 - 22592
Alignment:
Q  364 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgtttta 463  Q
    ||||||||| |||||| |||||||  | | |||||||||||||| |||||||  | | |||||||| ||||||| | | |  || ||||||||| |||||    
T  22423 aaaataaatggagttt-gcaatttacaaagagatagacacaaaa-aatagatagtggatcctaccactaagtgagttccacaataattaattatatttta 22520  T
Q  464 cttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatgaagaagat 535  Q
    ||||||| || | ||| ||||| | |||||||| |||||  |||||||||||  |||||||||| |||||||    
T  22521 cttttttcaagattttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggagaagat 22592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 515
Target Start/End: Complemental strand, 13710 - 13641
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggaga 515  Q
    |||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||| | |||||||||||    
T  13710 atcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 13794 - 13709
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccat 430  Q
    |||||| |||| |||||  ||||||||||||||||||| | ||||||| ||||||||| |||| |||||||| | ||||| |||||    
T  13794 aagatcttctccatttggcaaaataaatagagttttgctagttggagagagatagacaaaaaaaaatagatggtgggtcccaccat 13709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 344 - 501
Target Start/End: Original strand, 6395 - 6551
Alignment:
Q  344 taagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatccta 443  Q
    |||||||||||||||||  |||||||||| |  |||||||| ||||| | ||| |||||||||| |||||||| | |||||||| | ||| ||  | | |    
T  6395 taagatcctctctatttcgtaaaataaatgggattttgcaagttggaaagagacagacacaaaa-aatagatggtgggtcctacaactaaatgggtacaa 6493  T
Q  444 ttatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaat 501  Q
      |||||||||||| |||||||||||  || | ||| ||||||| |||||||| ||||    
T  6494 ccatcattaattatattttactttttccaagattttatgtgtctttatctctcaaaat 6551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 9162 - 9340
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctat 444  Q
    |||||| |||| |||||  ||||||||| ||| ||||||| ||||||| ||||||||||| || |||||||| | ||||| |||| |||||| || | |     
T  9162 aagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacacagaa-aatagatggtgggtccaaccactaagtggattccac 9260  T
Q  445 tatcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
     |||||||||||| ||    |||||| || | ||  |||| || ||||||||||||||| |||||| |||||  |||||||||    
T  9261 catcattaattatatt---atttttttaagatttcatgtgcctttatctctccaaatggaagaaattgagaaacacataaatg 9340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 73818 - 73880
Alignment:
Q  345 aagatcctctctatttgttaaaataaatagagttttgcaatttggagaaagatagacacaaaa 407  Q
    |||||||||||||||||  ||||||||| | ||||||||| ||||||| |||||||| |||||    
T  73818 aagatcctctctatttggcaaaataaatggtgttttgcaagttggagagagatagacgcaaaa 73880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 73901 - 73982
Alignment:
Q  446 atcattaattatgttttacttttttgaaaactttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatg 527  Q
    |||||||||||| ||||| |||||| || | ||| ||||| | |||||||| |||| | ||||||||||||  |||||||||    
T  73901 atcattaattatattttatttttttcaagattttatgtgtttttatctctctaaattgaagaaatggagaaacacataaatg 73982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 29566 - 29654
Alignment:
Q  381 gcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgaatcctattatcattaattatgttttactttttt 470  Q
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T  29566 gcaatttagagagagatagagacataa-aataggtaataggtcctagcattacgtgagtcccactatcattaattacattttactttttt 29654  T

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