View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_high_11 (Length: 307)
Name: NF4403_high_11
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30431211 - 30430918
Alignment:
| Q |
1 |
ttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30431211 |
ttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgt |
30431112 |
T |
|
| Q |
101 |
aaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcacttatttaatgattaatatttttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30431111 |
aaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttattttctccgaatgtgatttctcacttatttaatgattaatatttttgta |
30431012 |
T |
|
| Q |
201 |
tccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgatcatcatgcacaaaatcaatcggattc |
294 |
Q |
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| T |
30431011 |
tccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgatcatcacgcacaaaatcaatcgaattc |
30430918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 30419337 - 30419084
Alignment:
| Q |
9 |
tttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtca |
108 |
Q |
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||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |
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| T |
30419337 |
tttattgagttttatgcttatacaaacacaaatgtagggatggatcaatctattaaatatatgtcaatcatcttggatgattaatc-tttgtaaatgcca |
30419239 |
T |
|
| Q |
109 |
acttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtga-tttctcacttatttaatgattaatatttttgtatccatga |
207 |
Q |
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| T |
30419238 |
acttaatccccaagttgataaaactattatttttatcaatttgttttctccgaatgtgattttctcacttatttaatgatcaatatttttgtatccatga |
30419139 |
T |
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| Q |
208 |
tgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcct |
262 |
Q |
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|| ||| || ||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
30419138 |
tgtagaaaaagaagaagtcactagtaaggaatgaagcaagaatgactcattgcct |
30419084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 30416005 - 30415796
Alignment:
| Q |
52 |
atcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttg |
151 |
Q |
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|||||||||||||||| |||| ||||||||| |||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
30416005 |
atcaatctattaaatacatgttaatcatctaggatgattaatcttt-gtaaatgccaacttaatccccaagttgataaaactattatttttaccaatttg |
30415907 |
T |
|
| Q |
152 |
ttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaat |
250 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| |||||||||||||| |
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| T |
30415906 |
ttttctctgaatgcgattttctcacttatttaatgattaatatttttgtatccatgatgcagaaaaagaagaagtcactagtaaggaaagaagcaagaat |
30415807 |
T |
|
| Q |
251 |
gactcattgcc |
261 |
Q |
| |
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||||||||||| |
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| T |
30415806 |
gactcattgcc |
30415796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 30448219 - 30448121
Alignment:
| Q |
122 |
gttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcact---tatttaatgattaatatttttgtatccatgatgctgaagaa |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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| T |
30448219 |
gttgataaaactattatatttaccaatttgttttctccgaatattatttctcacttattatttaatgattaatatttttgtatccatgttgcagaagaa |
30448121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 30429497 - 30429345
Alignment:
| Q |
2 |
taaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgta |
101 |
Q |
| |
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||||||||| |||| ||||||||| |||| |||| ||||||| |||||||||||| | |||| || || |||||||||| |||| |||| || |||||| |
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| T |
30429497 |
taaagatttgattgtggtttatgcatataaaaattcaaatgttgggatggatcaatatcttaattagatctcaatcatcttagattattagtc-tttgta |
30429399 |
T |
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| Q |
102 |
aatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgtttt |
155 |
Q |
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|| ||| | ||||| || || |||||||| |||||||||||||| ||| |||| |
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| T |
30429398 |
aaggtccatttaagatccaaactgataaaattattatttttaccattttttttt |
30429345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 30447366 - 30447120
Alignment:
| Q |
1 |
ttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgt |
100 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| ||||| |||| | ||||| |||||||| ||||||| | |||||||||| ||||||||| ||| | |
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| T |
30447366 |
ttaaagatttgattgtggtttatgcatatagaaatataaatttt-ggatgcatcaatctcttaaataggtctcaatcatctcagatgattagtctatgta |
30447268 |
T |
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| Q |
101 |
aaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttc--tctgaatgtgatttctcacttatttaatgattaatatttttg |
198 |
Q |
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||| ||| |||||| | ||| | |||||||||||||||||||||||| ||||| || ||||| ||||| | |||||||||||||| |||| || |
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| T |
30447267 |
aaaggtcgacttaaaacccaagctaataaaactattatttttaccaattatttttctgtcataatgtcatttcacgcttatttaatgattgatatcatta |
30447168 |
T |
|
| Q |
199 |
tatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaa |
249 |
Q |
| |
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||| | ||| || |||| ||||| ||||||||||||||| ||| ||||| |
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| T |
30447167 |
tatgc---atgttgtagaagaagaattcactagtaagaaaaaaagaaagaa |
30447120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 30431619 - 30431528
Alignment:
| Q |
126 |
ataaaactattatttttaccaatttgttttctctgaatgtgatttct-cacttatttaatgattaatatttttgtatccatgatgctgaagaa |
217 |
Q |
| |
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|||||||||||||| | ||||||||||||| ||||| || |||| | |||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
30431619 |
ataaaactattattat-accaatttgtttttcctgaacgtcattttttcacttatttaatgattaatattttcatatccatgttgcagaagaa |
30431528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 30415141 - 30415030
Alignment:
| Q |
126 |
ataaaactattatttttaccaa----tttgttttctctgaatgtga-tttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaa |
220 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| |||| |||||||||| || |
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| T |
30415141 |
ataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcacttatttaatga-------ttttgtattcatgttgctgaagaagaa |
30415049 |
T |
|
| Q |
221 |
gaaatcactagtaagaaaa |
239 |
Q |
| |
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||| ||| || |||||||| |
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|
| T |
30415048 |
gaagtcattattaagaaaa |
30415030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 30430085 - 30429991
Alignment:
| Q |
124 |
tgataaaactatta-tttttaccaatttgttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaa |
217 |
Q |
| |
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||||||||||||| |||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||| || ||| |||| ||| |||||| |
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| T |
30430085 |
tgataaaactatttctttttaccaatt-gtttttttagaatgtcattttctcacttatttaatgattaatattgttttatgcatgttgcagaagaa |
30429991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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