View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4403_high_12 (Length: 282)

Name: NF4403_high_12
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4403_high_12
NF4403_high_12
[»] chr6 (8 HSPs)
chr6 (23-282)||(1906808-1907067)
chr6 (236-282)||(1891858-1891904)
chr6 (236-282)||(1902788-1902834)
chr6 (235-282)||(1912679-1912726)
chr6 (69-131)||(24769307-24769369)
chr6 (68-129)||(1912506-1912567)
chr6 (60-145)||(2732920-2733005)
chr6 (222-282)||(1897281-1897341)
[»] chr3 (2 HSPs)
chr3 (106-147)||(1813252-1813293)
chr3 (70-134)||(21011285-21011349)
[»] chr2 (1 HSPs)
chr2 (103-140)||(21379509-21379546)
[»] chr5 (2 HSPs)
chr5 (70-134)||(7477556-7477620)
chr5 (50-130)||(41894416-41894495)
[»] chr1 (4 HSPs)
chr1 (65-133)||(3335141-3335209)
chr1 (57-129)||(15606318-15606390)
chr1 (71-127)||(32868272-32868328)
chr1 (66-130)||(49825856-49825920)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 1906808 - 1907067
Alignment:
Q  23 tattcgaattctgttacgcaacagagttacagtgccgctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1906808 tattcgaattctgttacgcaacagagttacagtgccgctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttgt 1906907  T
Q  123 tcaaattccactgcactatagtgctgtagtgctatagccgctatttaacaacttcggccaagaaaattggttaaaactacattttttgcagagctttata 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  1906908 tcaaattccactgcactatagtgctgtagtgctatagccgctatttaacaacttcggccaagaaaattgtttaaaactacatttttcgcagtgctttata 1907007  T
Q  223 tttatgaaacaccttagtttattgtccacttatttgttttcttgttaacattgcaattaa 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  1907008 tttatgaaacaccttagtttatagtccacttatttgttttcttgttatcattgcaattaa 1907067  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 1891858 - 1891904
Alignment:
Q  236 ttagtttattgtccacttatttgttttcttgttaacattgcaattaa 282  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  1891858 ttagtttatagtccacttatttgttttcttgttatcattgcaattaa 1891904  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 1902788 - 1902834
Alignment:
Q  236 ttagtttattgtccacttatttgttttcttgttaacattgcaattaa 282  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  1902788 ttagtttatagtccacttatttgttttcttgttatcattgcaattaa 1902834  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 1912679 - 1912726
Alignment:
Q  235 cttagtttattgtccacttatttgttttcttgttaacattgcaattaa 282  Q
    |||||| |||||||| ||||||||||||| ||||| ||||||||||||    
T  1912679 cttagtctattgtccccttatttgttttcctgttatcattgcaattaa 1912726  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 24769369 - 24769307
Alignment:
Q  69 ctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattcc 131  Q
    |||||||| || | ||||||||||||| | | ||||||||||||| |||||| ||||||||||    
T  24769369 ctatttgacaatactttgtactaaatagtgtattgcagaacaataatgatttgttcaaattcc 24769307  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 1912506 - 1912567
Alignment:
Q  68 gctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaatt 129  Q
    ||||||||| || ||||||||||||||| | | | |||||||||||| ||||| ||||||||    
T  1912506 gctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttcaaatt 1912567  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 2733005 - 2732920
Alignment:
Q  60 ctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattccactgcactatagtg 145  Q
    |||| |||||||||||| |||| |||||||||||||   | | ||| |||||||| ||||| |||||||| |||| | ||||||||    
T  2733005 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 2732920  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 1897281 - 1897341
Alignment:
Q  222 atttatgaaacaccttagtttattgtccacttatttgttttcttgttaacattgcaattaa 282  Q
    |||||||||||| || ||| ||||||||||||||||  |||| | ||| ||||||||||||    
T  1897281 atttatgaaacatctcagtctattgtccacttattttgtttcctcttatcattgcaattaa 1897341  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 1813293 - 1813252
Alignment:
Q  106 gaacaatagtgatttattcaaattccactgcactatagtgct 147  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  1813293 gaacaatagtgatttgttcaaattccactgtactatagtgct 1813252  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 21011349 - 21011285
Alignment:
Q  70 tatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattccact 134  Q
    ||||||| ||| |||||||||| ||| ||| | | ||||||||||||||||||| ||||||||||    
T  21011349 tatttgacaaccatttgtactacatagtttatcgtagaacaatagtgatttatttaaattccact 21011285  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 21379546 - 21379509
Alignment:
Q  103 gcagaacaatagtgatttattcaaattccactgcacta 140  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  21379546 gcagaacaatagcgatttattcaaattccgctgcacta 21379509  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 7477556 - 7477620
Alignment:
Q  70 tatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattccact 134  Q
    ||||||| |||| ||||||||||||| |   | || |||||||||||||||||| ||||||||||    
T  7477556 tatttgacaacactttgtactaaatagtaaatcgcggaacaatagtgatttattaaaattccact 7477620  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 41894495 - 41894416
Alignment:
Q  50 tacagtgccgctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattc 130  Q
    |||||||||||||| |||||||||||| |||| |||||| ||||||   | |||||||||||||   |||| |||||||||    
T  41894495 tacagtgccgctat-gctgctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattc 41894416  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 3335209 - 3335141
Alignment:
Q  65 gctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattccac 133  Q
    |||||||||||| |||| ||| ||||||| |   ||| || ||||||||||||||| ||||||||||||    
T  3335209 gctgctatttgacaacactttatactaaacagggtgtcgcggaacaatagtgatttgttcaaattccac 3335141  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 15606318 - 15606390
Alignment:
Q  57 ccgctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaatt 129  Q
    ||||||| |||| ||||||| |||| |||||||||||||   | | |||||||||||||||||| || |||||    
T  15606318 ccgctatagctgttatttgacaacattttgtactaaatagcatatagcagaacaatagtgatttgtttaaatt 15606390  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 32868328 - 32868272
Alignment:
Q  71 atttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaa 127  Q
    |||||| ||||||||| |||||||| | | |||||||||||||| ||||| ||||||    
T  32868328 atttgacaacaatttgcactaaatagtatattgcagaacaatagcgatttgttcaaa 32868272  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 49825920 - 49825856
Alignment:
Q  66 ctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttattcaaattc 130  Q
    ||||||||| | || | ||||||||||||| | | |||||||||||||||| |||| ||||||||    
T  49825920 ctgctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgttttagtcaaattc 49825856  T

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