View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_high_13 (Length: 250)
Name: NF4403_high_13
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1903204 - 1903445
Alignment:
| Q |
1 |
taatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
100 |
Q |
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| T |
1903204 |
taatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
1903303 |
T |
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| Q |
101 |
caatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatga |
193 |
Q |
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| T |
1903304 |
caatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatga |
1903399 |
T |
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| Q |
194 |
gatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
239 |
Q |
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| T |
1903400 |
gatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1903445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1907437 - 1907678
Alignment:
| Q |
1 |
taatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1907437 |
taatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
1907536 |
T |
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| Q |
101 |
caatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatga |
193 |
Q |
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| T |
1907537 |
caatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatga |
1907632 |
T |
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| Q |
194 |
gatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
239 |
Q |
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| T |
1907633 |
gatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1907678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
11 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
110 |
Q |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
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| Q |
111 |
tatcggtcggtgctgcatagtatttactagaatgt |
145 |
Q |
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| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 1898089 - 1898145
Alignment:
| Q |
183 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
239 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
1898089 |
ttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1898145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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