View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_high_6 (Length: 361)
Name: NF4403_high_6
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 41 - 347
Target Start/End: Original strand, 16663794 - 16664095
Alignment:
| Q |
41 |
tctaaaaccaattagtataatgtgattttatcaatgtgtttctgcatgaattgtaactctctaaatagtcttttcagtcatcggtgtgaaatctagcact |
140 |
Q |
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| T |
16663794 |
tctaaaaccaattagtataatgtgattttatcaatgtgtttctgtatgaattgtaactctctaaatagtcttttcagtcattggtgtgaaatctagcact |
16663893 |
T |
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| Q |
141 |
ggaaagcagcagcatagtgctcgtggtctaattccatggtgagcttaaaattgtagactttagtgc-ctaatttacaaacaaaataattgttattacaat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16663894 |
ggaaagcagcagcatagtgctcgtggtctaattccatggtgagcttaaaattgtagactttagtgcactaatttacaaacaaaataattgttattacaat |
16663993 |
T |
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| Q |
240 |
atcccttaaactcccttgtagttgtagtgctttcattgaattgaactcctttgttttttaataatgctgcacctctatctagaagtcagagaaacttatg |
339 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16663994 |
atcccttaaactccc------ttgtagtgctttcattgaattgaactcctttgttttttaataatgctgcacctctatctagaagtcagagaaacttatg |
16664087 |
T |
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| Q |
340 |
taaaaaat |
347 |
Q |
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|||||||| |
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| T |
16664088 |
taaaaaat |
16664095 |
T |
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