View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4403_high_7 (Length: 345)
Name: NF4403_high_7
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 146 - 332
Target Start/End: Original strand, 4913828 - 4914016
Alignment:
| Q |
146 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
245 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| | |||| || || ||||||||||| ||| || |
|
|
| T |
4913828 |
tcaaagagagatagatattcaa-gagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggctt |
4913926 |
T |
|
| Q |
246 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccacatagtcct |
332 |
Q |
| |
|
|||||||| |||||||| ||| |||||| |||||||||| || |||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
4913927 |
gtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcct |
4914016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 4913636 - 4913746
Alignment:
| Q |
36 |
aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat |
135 |
Q |
| |
|
|||||||||| |||| ||||||| | || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4913636 |
aaagttccatctctctttgaatttagaaagcaatttctaagttggagaacttttaattgaaaagtagggtgccatgatggactttcttcagtttccacat |
4913735 |
T |
|
| Q |
136 |
acaagttattt |
146 |
Q |
| |
|
||||||||||| |
|
|
| T |
4913736 |
acaagttattt |
4913746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 146 - 325
Target Start/End: Original strand, 32746839 - 32747020
Alignment:
| Q |
146 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| | | || || || ||||||||| |||||| |
|
|
| T |
32746839 |
tcaaagagagatagatattcaa-gagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggttt |
32746937 |
T |
|
| Q |
246 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccaca |
325 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||| | | |||||||||| |||| |
|
|
| T |
32746938 |
gtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcaca |
32747020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 32746644 - 32746753
Alignment:
| Q |
36 |
aaagttccatttctccttgaattcacaatgcaatttctaagttggaggactttcaattgaaaagtagggtgccatgatggactttctgtagtttccacat |
135 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||| |||||||||| ||| | |||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
32746644 |
aaagttccatttctccttgaatttagaaagcaatttttaagttggagaactcttaattgaaatgtagggtgccatgatggattttcttcagtttccacat |
32746743 |
T |
|
| Q |
136 |
acaagttatt |
145 |
Q |
| |
|
||| ||||| |
|
|
| T |
32746744 |
gcaatttatt |
32746753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 2126792 - 2126835
Alignment:
| Q |
298 |
caagttccagcatattcttcattccacatagtcctatgctactc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
2126792 |
caagttccagcatattcttcattccacatagtcctgtggtactc |
2126835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University