View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4403_high_8 (Length: 340)

Name: NF4403_high_8
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4403_high_8
NF4403_high_8
[»] chr2 (7 HSPs)
chr2 (8-322)||(45330418-45330732)
chr2 (8-322)||(31712735-31713044)
chr2 (8-322)||(39156065-39156376)
chr2 (19-104)||(810106-810191)
chr2 (51-144)||(10414571-10414664)
chr2 (19-104)||(27560853-27560940)
chr2 (19-104)||(37457294-37457381)
[»] chr6 (6 HSPs)
chr6 (19-322)||(17354279-17354580)
chr6 (8-322)||(27690204-27690515)
chr6 (8-322)||(27682883-27683194)
chr6 (8-295)||(13143460-13143734)
chr6 (8-201)||(30229890-30230081)
chr6 (19-128)||(27525908-27526017)
[»] chr7 (2 HSPs)
chr7 (11-168)||(6023773-6023930)
chr7 (19-132)||(28802255-28802367)
[»] chr3 (3 HSPs)
chr3 (59-141)||(7688246-7688328)
chr3 (19-104)||(5735709-5735794)
chr3 (19-104)||(5772821-5772906)
[»] chr1 (7 HSPs)
chr1 (19-132)||(14648947-14649060)
chr1 (19-132)||(14658737-14658850)
chr1 (19-105)||(47051959-47052045)
chr1 (19-104)||(19657896-19657983)
chr1 (57-144)||(29290410-29290497)
chr1 (40-74)||(16099486-16099520)
chr1 (57-125)||(46128573-46128639)
[»] scaffold0713 (1 HSPs)
scaffold0713 (19-128)||(3777-3886)
[»] chr5 (2 HSPs)
chr5 (40-130)||(5520807-5520896)
chr5 (19-104)||(42784172-42784257)
[»] chr8 (3 HSPs)
chr8 (19-104)||(4707912-4707997)
chr8 (40-132)||(15998366-15998457)
chr8 (29-132)||(26918672-26918774)
[»] chr4 (2 HSPs)
chr4 (40-122)||(11514026-11514108)
chr4 (19-104)||(5742960-5743047)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 45330418 - 45330732
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45330418 tgagaagaaagatacccattttgtgaaggttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 45330517  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45330518 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 45330617  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45330618 aagcaatgtaggcatattgcttctgctattcgttccttgtagaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 45330717  T
Q  308 tctggaagcctatat 322  Q
    |||||||||||||||    
T  45330718 tctggaagcctatat 45330732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 31712735 - 31713044
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  31712735 tgagaagaaaaatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatgatta 31712834  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||  ||||||||||||    
T  31712835 gtgagttagaaattaa--tttgagagtaaagtataaaagatttcaacatataaatatgacatggactttcatttactttgaatggt--tatatataattt 31712930  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  31712931 aagcaatgtaggcatattgcttctgctattcgttccttgtagaataagcatttgtgtcatattcggtctaaaacaaaagttgggaata-aattaataagt 31713029  T
Q  308 tctggaagcctatat 322  Q
    |||||||||||||||    
T  31713030 tctggaagcctatat 31713044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 39156376 - 39156065
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  39156376 tgagaagaaaaatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatgatta 39156277  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  39156276 gtgagttagaaattaattt--gagagtaaagtataaaagatttcaacatataaatatgacatggactttcatttactttgaatggttatatatataattt 39156179  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 307  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  39156178 aagcaatgtaggcacattgcttctgctattcgttccttgtagaataagcatttgtgtcatattcgatctaaaacaaaagttgggaata-aattaataagt 39156080  T
Q  308 tctggaagcctatat 322  Q
    || ||||||||||||    
T  39156079 tccggaagcctatat 39156065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 810191 - 810106
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||  | |||||||||||||||||| || |||||||||||  |||||| ||||||    
T  810191 atacccatattgtgagagttgctcattgagactccctgaggtatatttatcaacttacaattcaattagtgtttatttacacatga 810106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 10414571 - 10414664
Alignment:
Q  51 tctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttttgagagtaaagtatata 144  Q
    ||||| |||||||||||||||||| | |||||||||||| |||||||  |||||||||   |||||| ||||||||| |||| || ||||||||    
T  10414571 tctttgaggtatatttatcaacttacctttcaattagtgtatatttaagcatgattaggttgttagatattaattttagagattagagtatata 10414664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 27560853 - 27560940
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgca--tttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| ||||||||||||| |||| ||  | ||||||||||  |||||| ||||||    
T  27560853 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatga 27560940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 37457294 - 37457381
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgca--tttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| ||||||||||||| |||| ||  | ||||||||||  |||||| ||||||    
T  37457294 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatga 37457381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 17354279 - 17354580
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaa 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  17354279 atacccattttgtgaaggttgctcattgagactctttaaggtatatttatcaacttatatttcaattagtgcatatttagacatgattagtgaattagaa 17354378  T
Q  119 attaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataatttaagcaatgtag 218  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  17354379 -ttaatttttgagagtaaagtatataagatttcaacatataaatatgacatggaccttcatttactttgaatggtgttatatataatttaagcaatgtag 17354477  T
Q  219 gcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagttctggaagcct 318  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  17354478 gcatattgcttctgctattcgttccttgtagaataagcatttgtgtcatattctgtctaaaataaaagttgggaata-aattaataagttctggaagcct 17354576  T
Q  319 atat 322  Q
    ||||    
T  17354577 atat 17354580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 27690204 - 27690515
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  27690204 tgagaagaaaaatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatgatta 27690303  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  27690304 gtgagttagaaattaattt--gagagtaaagtataaaagatttcaacatataaatatgacatggactttcatttactttgaatggttatatatataattt 27690401  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 307  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||  |||||||||||||||||||||| ||||||||| |    
T  27690402 aagcaatgtaggcacattgcttctgctattcgttccttgtagaataagcatttgtgtcatattcgatctaaaacaaaagttgggaata-aattaataaat 27690500  T
Q  308 tctggaagcctatat 322  Q
    |||||||||||||||    
T  27690501 tctggaagcctatat 27690515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 27682883 - 27683194
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  27682883 tgagaagaaaaatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatgatta 27682982  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  27682983 gtgagttagaaattaattt--gagagtaaagtataaaagatttcaacatataaatatgacatggactttcatttactttgaatggttatatatataattt 27683080  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaatataattaataagt 307  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||  |||||||||||||||  |||||||||||||||||||||| ||||||||| |    
T  27683081 aagcaatgtaggcacattacttctgctattcgttccttgtagaataagcatttgtgtcatattcaatctaaaacaaaagttgggaata-aattaataaat 27683179  T
Q  308 tctggaagcctatat 322  Q
    |||||||||||||||    
T  27683180 tctggaagcctatat 27683194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 13143734 - 13143460
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13143734 tgagaagaaaaatacccattttatgaaggttgctcattgagactctttaaggtatatttatcaacttacatttcaattagtgcatatttagacatgatta 13143635  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatatataattt 207  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13143634 gtgagttagaaattaatt---------aaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaatggttatatatattattt 13143544  T
Q  208 aagcaatgtaggcatattgcttctgctattcgttccttgttgaataaaaatttgtgtcatattctgtctaaaacaaaagttgggaata 295  Q
    |||||    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||  |||| ||||||||||||||    
T  13143543 aagca----aggcatattgcttctgctattcgttccttgtagaataagcatttgcgtcatattctgtacaaaataaaagttgggaata 13143460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 30230081 - 30229890
Alignment:
Q  8 tgagaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgatta 107  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  30230081 tgagaagaaaaatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatgatta 30229982  T
Q  108 gtgagttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgatatggaccttcatttactttgaattgttatatata 201  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  30229981 gtgagttagaaattaa--tttgagagtaaagtataaaagatttcaacatataaatatgacatggactttcatttactttgaatggttatatata 30229890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 27525908 - 27526017
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttaga 117  Q
    |||||||| | ||||| |||| ||||||||||| |||  |||||||||||||||||| ||  ||||||||||||||||||||||||||||||  ||||||    
T  27525908 atacccatatagtgaaagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagt-tgttaga 27526006  T
Q  118 aattaattttt 128  Q
    |||||||||||    
T  27526007 aattaattttt 27526017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 6023930 - 6023773
Alignment:
Q  11 gaagaaagatacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtg 110  Q
    ||||||| ||| |||| ||||||| || | ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  6023930 gaagaaaaatatccatcttgtgaaagtcgttcattgagactctttgaggtatatttatcaacttacatttcaattagtgtatatttaggcatgattagtg 6023831  T
Q  111 agttagaaattaatttttgagagtaaagtatataagatttcaacatataaatatgata 168  Q
     |||| ||||||||||| ||||||| ||||||||  | | |||||||| |||||||||    
T  6023830 ggttataaattaattttagagagtagagtatatataactccaacatatgaatatgata 6023773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 28802255 - 28802367
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttaga 117  Q
    |||||||| |||| || | | |||||||||||| ||| |||||||||||||||| |  ||  |||||||||| |||||||| ||||||||||  ||||||    
T  28802255 atacccatattgtaaaaggttctcattgagacttcttgaaggtatatttatcaattgacaactcaattagtgtatatttaggcatgattagt--gttaga 28802352  T
Q  118 aattaatttttgaga 132  Q
    |||||||| ||||||    
T  28802353 aattaattattgaga 28802367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 7688246 - 7688328
Alignment:
Q  59 gtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttttgagagtaaagtat 141  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |||||    
T  7688246 gtatatttatcaacttacatttcaattagtgcatatttaggcatgattagtgagttagaaattaatttttaagactagagtat 7688328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5735794 - 5735709
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||||||| ||| | || |||||||||||  |||||| ||||||    
T  5735794 atacccatattgtgagagttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatga 5735709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5772906 - 5772821
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||||||| ||| | || |||||||||||  |||||| ||||||    
T  5772906 atacccatattgtgagagttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatga 5772821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 14648947 - 14649060
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttaga 117  Q
    |||||||| | ||||| |||| ||||||||||| |||  |||||||||||||||||| ||  ||||||||||||||||||||||||||||||  ||||||    
T  14648947 atacccatatagtgaaagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagt-tgttaga 14649045  T
Q  118 aattaatttttgaga 132  Q
    |||||||||||||||    
T  14649046 aattaatttttgaga 14649060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 14658737 - 14658850
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttaga 117  Q
    |||||||| | ||||| |||| ||||||||||| |||  |||||||||||||||||| ||  ||||||||||||||||||||||||||||||  ||||||    
T  14658737 atacccatatagtgaaagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagt-tgttaga 14658835  T
Q  118 aattaatttttgaga 132  Q
    |||||||||||||||    
T  14658836 aattaatttttgaga 14658850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 47052045 - 47051959
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgat 105  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| || |||||||||||  |||||| |||||||    
T  47052045 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgat 47051959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 19657983 - 19657896
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgca--tttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| ||||||||||||| |||| ||  | ||||||||||  |||||| ||||||    
T  19657983 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatga 19657896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 29290497 - 29290410
Alignment:
Q  57 aggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttttgagagtaaagtatata 144  Q
    |||||||||||||||||| |  ||||||||||| |||||||  |||||||||   |||||| ||||||||| |||| || ||||||||    
T  29290497 aggtatatttatcaacttacccttcaattagtgtatatttaagcatgattaggttgttagatattaattttagagattagagtatata 29290410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 16099486 - 16099520
Alignment:
Q  40 ctcattgagactctttaaggtatatttatcaactt 74  Q
    ||||||||| |||||||||||||||||||||||||    
T  16099486 ctcattgaggctctttaaggtatatttatcaactt 16099520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 46128573 - 46128639
Alignment:
Q  57 aggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatt 125  Q
    ||||||||||| ||| || ||  ||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  46128573 aggtatatttaccaatttacaactcaattattgcatatttaggcatgattagt--gttagaaattaatt 46128639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 3777 - 3886
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttaga 117  Q
    |||||||| | ||||| |||| ||||||||||| |||  |||||||||||||||||| ||  ||||||||||||||||||||||||||||||  ||||||    
T  3777 atacccatatagtgaaagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagt-tgttaga 3875  T
Q  118 aattaattttt 128  Q
    |||||||||||    
T  3876 aattaattttt 3886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 5520896 - 5520807
Alignment:
Q  40 ctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttttga 130  Q
    |||||||||  ||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  5520896 ctcattgaggttctttgaggtatatttatcaacttatctttcaattagtgcatatttagacatgattagt-tgttagaaattaatttttga 5520807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 42784172 - 42784257
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| || |||||||||||  |||||| ||||||    
T  42784172 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatga 42784257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 4707997 - 4707912
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| || |||||||||||  |||||| ||||||    
T  4707997 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatga 4707912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 15998366 - 15998457
Alignment:
Q  40 ctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttttgaga 132  Q
    |||||||||||| ||| |||||||||||||||| || ||  |||||||||| |||||||  |||||||| |  |||||||||||||| ||||||    
T  15998366 ctcattgagacttcttgaaggtatatttatcaatttacaactcaattagtgtatatttacgcatgattact--gttagaaattaattattgaga 15998457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 26918774 - 26918672
Alignment:
Q  29 tgtgaatgttgctcattgagact-ctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaattaatttt 127  Q
    |||||| |||| ||||| ||||| |||  ||||||||||||||| || ||  ||||||||||||||||||| ||||||| ||  ||||| |||||||| |    
T  26918774 tgtgaaagttgatcattaagacttcttggaggtatatttatcaatttacaactcaattagtgcatatttaggcatgattggt--gttaggaattaattat 26918677  T
Q  128 tgaga 132  Q
    |||||    
T  26918676 tgaga 26918672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 11514108 - 11514026
Alignment:
Q  40 ctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatgattagtgagttagaaatta 122  Q
    ||||||||  ||||||||||||||||||||||| | ||||||||||| | |||| ||||||||||||| ||||||||| ||||    
T  11514108 ctcattgaagctctttaaggtatatttatcaacatacatttcaattaatacatagttagacatgattattgagttagagatta 11514026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5743047 - 5742960
Alignment:
Q  19 atacccattttgtgaatgttgctcattgagactctttaaggtatatttatcaacttgca--tttcaattagtgcatatttagacatga 104  Q
    |||||||| ||||||  |||||||||||||||||||| ||||||||||||| |||| ||  | ||||||||||  |||||| ||||||    
T  5743047 atacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatga 5742960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University