View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_high_9 (Length: 326)
Name: NF4403_high_9
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 30318963 - 30319265
Alignment:
| Q |
17 |
aattaaaagatagaaaaacacaacaagtcctcttaacaaaatgagnnnnnnnn-gttgtaaagttgaatcttagtcctagccaaacgacagactcactaa |
115 |
Q |
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| T |
30318963 |
aattaaaagatagaaaaacacaacaagtcctctgaacaaaatgagaaaaaaaaagttgtaaagttgaatcttagtcctagccaaacgacagactcactaa |
30319062 |
T |
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| Q |
116 |
gcacttacattactatattcattcattgnnnnnnnn-gtgaaaaatgatgatgattatgaaccccaatatctccatttgaagggacaatgtttcatgatt |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30319063 |
gcacttacattactatattcattcattgaaaaaaaaagtgaaaaatgatgatgattatgaaccccaatatctccatttgaagagacaatgtttcatgatt |
30319162 |
T |
|
| Q |
215 |
cctcatgtacttcatatataatataatcatacattgcaactctgacaaacaaacaatgtgacaatcctaaaaatcccagtaataatataataataatgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319163 |
cctcatgtacttcatatataatataatcatacattgcaactctgacaaacaaacaatgtgacaatcctaaaaatcccagtaataatataataataatgat |
30319262 |
T |
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| Q |
315 |
gat |
317 |
Q |
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||| |
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| T |
30319263 |
gat |
30319265 |
T |
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