View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_low_16 (Length: 238)
Name: NF4403_low_16
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 53480516 - 53480294
Alignment:
| Q |
16 |
ctattaaatctctcacgcaatgccatcccactcactcgatgatctttccaaaacacagtgtcactaccatcgcccataatctttgaaagattattattaa |
115 |
Q |
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| T |
53480516 |
ctattaaatctctcacgcaatgccatcccactcactcaaggatctttccaaaacatagtgtcactaccatcgcccataatctttgaaagattattattaa |
53480417 |
T |
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| Q |
116 |
accaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccagatagaatccttatgagatccatccaaaattctacagcaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
53480416 |
accaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccaaataaaatccttatgagatccatccaaaattctacaacaaca |
53480317 |
T |
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| Q |
216 |
cacactaatttacactataatac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
53480316 |
cacactaatttacactataatac |
53480294 |
T |
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