View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4403_low_3 (Length: 539)

Name: NF4403_low_3
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4403_low_3
NF4403_low_3
[»] chr3 (2 HSPs)
chr3 (168-521)||(55383204-55383557)
chr3 (96-170)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (6-163)||(53730768-53730925)
chr4 (88-167)||(53731276-53731353)
[»] chr2 (2 HSPs)
chr2 (1-78)||(596765-596844)
chr2 (88-168)||(597190-597268)
[»] chr8 (2 HSPs)
chr8 (88-168)||(26936796-26936874)
chr8 (1-135)||(26937217-26937344)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 168 - 521
Target Start/End: Complemental strand, 55383557 - 55383204
Alignment:
Q  168 ttacttatttatttatagaatagaaagagaatgcaaagaaatgggtggagaggaagtaagggaagcagagtgagcgagcagtaatgttaacttgtggagc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383557 ttacttatttatttatagaatagaaagagaatgcaaagaaatgggtggagaggaagtaagggaagcagagtgagcgagcagtaatgttaacttgtggagc 55383458  T
Q  268 aaaatggatgtcagcctctccaattccatccaaatgctcactgcnnnnnnnnnnnnnnnnnnnnnncaccaataactatcgacccgccgtcattctcccg 367  Q
    ||||||||||||||||||||||||||||||||||||||||| ||                      ||||||||||||||||||||||||||||||||||    
T  55383457 aaaatggatgtcagcctctccaattccatccaaatgctcacggccttcttcttcttcatcttcttccaccaataactatcgacccgccgtcattctcccg 55383358  T
Q  368 gttagtctctctttctctttctctatatctatattatcaccgctcctcacatcgcattcatttggttttttatttcttgaaccaggggttagggaacaat 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383357 gttagtctctctttctctttctctatatctatattatcaccgctcctcacatcgcattcatttggttttttatttcttgaaccaggggttagggaacaat 55383258  T
Q  468 tccggtgactaccagaagttggaggcaactctgaacaataactacggtgtgtcc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383257 tccggtgactaccagaagttggaggcaactctgaacaataactacggtgtgtcc 55383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 19341979 - 19341907
Alignment:
Q  96 tatgtggcaaaatgttattggccgactatgtaaagttcttctttacaccgtcagtccaccacaattaaactctta 170  Q
    |||||||||||||||||||||| |||| |||||||||||  ||||||| |||||| |||||||||||||||||||    
T  19341979 tatgtggcaaaatgttattggctgactgtgtaaagttct--tttacacagtcagtgcaccacaattaaactctta 19341907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 53730925 - 53730768
Alignment:
Q  6 gagtaacgacacaact--gacaagaacgtggagaggcacaccttcagaatttaccttttattgaataaattaacannnnnnnnnaaaaagattatgtggc 103  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| |||||||| |     
T  53730925 gagtaacgacacaacaaagacaagaacgtggagaggcacaccttcagaatttaccttttattgaataaattaacattttttttaaaaaggattatgttga 53730826  T
Q  104 aaaatgttattggccgactatgtaaagttcttctttacaccgtcagtccaccacaattaa 163  Q
    ||||  ||||||||  ||| |||||||||||  ||||||| |||||| ||||||||||||    
T  53730825 aaaaatttattggctaactgtgtaaagttct--tttacacggtcagtgcaccacaattaa 53730768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 53731276 - 53731353
Alignment:
Q  88 aaaaagattatgtggcaaaatgttattggccgactatgtaaagttcttctttacaccgtcagtccaccacaattaaactc 167  Q
    |||| ||||||||||||||||||||||||  |||| |||||||||||  ||||||| |||||| ||||||||||||||||    
T  53731276 aaaaggattatgtggcaaaatgttattggttgactgtgtaaagttct--tttacacagtcagtgcaccacaattaaactc 53731353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 596844 - 596765
Alignment:
Q  1 ggggagagtaacgacacaact--gacaagaacgtggagaggcacaccttcagaatttaccttttattgaataaattaaca 78  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  596844 ggggggagtaacgacacaacaaagacaagaacgtggagaggcacaccttcagaatttaccttttattgtataaattaaca 596765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 597190 - 597268
Alignment:
Q  88 aaaaagattatgtggcaaaatgttattggccgactatgtaaagttcttctttacaccgtcagtccaccacaattaaactct 168  Q
    |||| ||||||||||||||||||||||| | |||| |||||||||||  ||||||| |||||| |||||||||||||||||    
T  597190 aaaaggattatgtggcaaaatgttattgactgactgtgtaaagttct--tttacacagtcagtgcaccacaattaaactct 597268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 26936874 - 26936796
Alignment:
Q  88 aaaaagattatgtggcaaaatgttattggccgactatgtaaagttcttctttacaccgtcagtccaccacaattaaactct 168  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||  ||||||| |||||| |||||||||||||||||    
T  26936874 aaaaggattatgtggcaaaatgttattggctgactgtgtaaagttct--tttacacagtcagtgcaccacaattaaactct 26936796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 26937217 - 26937344
Alignment:
Q  1 ggggagagtaacgacacaact--gacaagaacgtggagaggcacaccttcagaatttaccttttattgaataaattaacannnnnnnnnaaaaagattat 98  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||        |||||||||||||||||||||||||         |||| ||||||    
T  26937217 ggggggagtaacgacacaacaaagacaagaacgtggagaggcacacc--------ttaccttttattgaataaattaaca-tttttttaaaaaggattat 26937307  T
Q  99 gtggcaaaatgttattggccgactatgtaaagttctt 135  Q
    |||||||||| |||||||| |||| |||||| |||||    
T  26937308 gtggcaaaattttattggctgactgtgtaaatttctt 26937344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University