View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_low_4 (Length: 471)
Name: NF4403_low_4
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 444
Target Start/End: Complemental strand, 867187 - 866944
Alignment:
| Q |
204 |
ctcactcacaaagttgaaatgcaatgtggtgacaaagaaaaggatgggaggctcnnnnnnnnnnnnnnnnnnnntgggtgtgtgtggctgcgttagaaag |
303 |
Q |
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| T |
867187 |
ctcactcacaaagttgaaatgcaatgtggtgacaaagaaaaggatgggaggctcagaaagaaagaaaaaa----tgggtgtgtgtggctgcgttagaaag |
867092 |
T |
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| Q |
304 |
aagaaacgcctcgccatacaacacaaca----------caacaaccgttcatcactgcctccnnnnnnnnnnnnnnnnnnnnntgaaatgttcaaacaaa |
393 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
867091 |
aagaaacgcctcgccatacaacacaacacaacacaacacaacaaccgttcatcactgcctccagaagaagaagaagaagaa---gaaatgttcaaacaaa |
866995 |
T |
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| Q |
394 |
acaaccatgcaaatgcaaataatcttttctacttcaatactttacctcaaa |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866994 |
acaaccatgcaaatgcaaataatcttttctacttcaatactttacctcaaa |
866944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 867353 - 867275
Alignment:
| Q |
36 |
acagaagcatggctgcgggagtcgcctcgccatgagactactctgttctgttttgatcgatcatcacagcctcgtcctc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
867353 |
acagaagcatggctgcgggagtcgcctcgccatgagactactctgttctgttttgatcgatcatcacagcctcgtcctc |
867275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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