View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_low_5 (Length: 468)
Name: NF4403_low_5
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 46 - 450
Target Start/End: Original strand, 32343597 - 32344001
Alignment:
| Q |
46 |
tacccatcagaaggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaaca |
145 |
Q |
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| T |
32343597 |
tacccatcagatggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaaca |
32343696 |
T |
|
| Q |
146 |
ctaagcatattcctacaaccaaaatgaacttcatctccatgacagtattaatctatgtgactatagtaaaacacacttcacttacacaactttatacaaa |
245 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32343697 |
ctaagcatatccccacaaccaaaatgaacttcatctccatgacaatattaatctatgtgactatagtaaaacacacttcacttacaccactttatacaaa |
32343796 |
T |
|
| Q |
246 |
tatgcaccatatacgcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatctnnnnnnntaaattgaaata |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
32343797 |
tatgcaccatatacgcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatgtaaaaaaataaattgaaata |
32343896 |
T |
|
| Q |
346 |
tttaatgtccaattgtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtccagctctatcacatgcatggt |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32343897 |
tttaatgtccaattgtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtctagctctatcacatgcatggt |
32343996 |
T |
|
| Q |
446 |
atgtg |
450 |
Q |
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||||| |
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| T |
32343997 |
atgtg |
32344001 |
T |
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