View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4403_low_7 (Length: 386)
Name: NF4403_low_7
Description: NF4403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4403_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 36470605 - 36470444
Alignment:
| Q |
14 |
agatgaacaacatttgaagtgttctacttgtgaatcaatagcatcctatccaaattctatttgcaaatcaatcatttacatcaaataatctcacatatga |
113 |
Q |
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| T |
36470605 |
agatgaacaacatttgaagtgttctacttgtgaatcaatagcatcctatccaaattctatttgcaaatcaatcatttacatcaaataatctcacatatgg |
36470506 |
T |
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| Q |
114 |
ttttggatttagagtgggaaatagtttactttctcaatatgaagcctaaccaacacatgcgc |
175 |
Q |
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| T |
36470505 |
ttttggatttagagtgggaaatagtttactttctcaatatgaagcctaaccaacacatgcgc |
36470444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 36470440 - 36470318
Alignment:
| Q |
248 |
gagtcgtaagtgaaacaaaatagtactattaaagacggattcatgagaatgaagtgtcgaatttttctatatggaatggatgtatgaaaggtgaatgcac |
347 |
Q |
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| T |
36470440 |
gagtcgtaagtgaaacaaaatagaactattaaagacggattcatgagaatgaagtgtcgaatttttctatatggaatggatgtatgaaaggtgaatgcac |
36470341 |
T |
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| Q |
348 |
aactgtgagtacataagaactat |
370 |
Q |
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| T |
36470340 |
aactgtgagtacataagcactat |
36470318 |
T |
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