View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4404-Insertion-1 (Length: 893)
Name: NF4404-Insertion-1
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-1 |
 | |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 793; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 8 - 893
Target Start/End: Complemental strand, 43463356 - 43462469
Alignment:
| Q |
8 |
caaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcnnnnnnnn--gggaatagaaatgaaacaaaacg |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43463356 |
caaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcaaaaaaaaaagggaatagaaatgaaacaaaacg |
43463257 |
T |
|
| Q |
106 |
taaagatcatgaagataacttaccaccatcaaagggaggtgctccacataagagaaagtatatgatcacacctgcactccacacatcagcttctggccca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43463256 |
taaagatcatgaagataacttaccaccatcaaatggaggtgctccacataagaaaaagtatatgatcacacccgcactccacacatcagcttctggccca |
43463157 |
T |
|
| Q |
206 |
taacactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaaagaagattgttagtcacaaagactat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43463156 |
taacactctcttataacctcaggtgccatataataaggacttcctactgcatcactaaatttttctcctgcaatagaagattgttagtcacaaagactat |
43463057 |
T |
|
| Q |
306 |
atatgatcattacagtaccaatagtaggtttcaagaaatggttggagattggtataaattggagaaggggattatttccatacctggtttgaagaaacta |
405 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43463056 |
atattatcattacagtaccaatagtaggtttcaagaaatggttagagattggtataaattggagaaggggattatttccatacctggtttgaagaaacta |
43462957 |
T |
|
| Q |
406 |
gacaatccaaaatcaattgctttaagagttgaatattcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43462956 |
gacaatccaaaatcaattgctttaagagttgaatcttcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaatgcataactccacgtgagt |
43462857 |
T |
|
| Q |
506 |
gacaagtctcaacaacactaacaatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcc |
605 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462856 |
gacaagtctcaacaacactaacgatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcc |
43462757 |
T |
|
| Q |
606 |
tttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttggactcccaaccaagtgatgcattatctta |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
43462756 |
tttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttagactcccaaccaagtgatgcattatctta |
43462657 |
T |
|
| Q |
706 |
atctccatcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaa |
805 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
43462656 |
atttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcatacgttttcccggttgatttctccaaacaaa |
43462557 |
T |
|
| Q |
806 |
gtgaagtagttccgaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattga |
893 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43462556 |
gtgaagtagttccaaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattga |
43462469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 342 - 889
Target Start/End: Complemental strand, 43453581 - 43453034
Alignment:
| Q |
342 |
aatggttggagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatat |
441 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||| |||| | |
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|
| T |
43453581 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
43453482 |
T |
|
| Q |
442 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaa |
541 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| | |
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|
| T |
43453481 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcga |
43453382 |
T |
|
| Q |
542 |
gtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcaga |
641 |
Q |
| |
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||||||| |||||| |||| ||| | | |||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| | | |
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|
| T |
43453381 |
gtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccgg |
43453282 |
T |
|
| Q |
642 |
atcttcataaactccttttatacatatcacatttggactcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttct |
741 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||| ||| |
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|
| T |
43453281 |
atcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctcta |
43453182 |
T |
|
| Q |
742 |
aacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattccccttctccaagttcat |
841 |
Q |
| |
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|||||||| |||||||| ||| | |||||||| || | |||| ||||||||||||||||||||||||||||||||| || | |||| |||||||||| |
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|
| T |
43453181 |
aacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcat |
43453082 |
T |
|
| Q |
842 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaa |
889 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||||||| |||||||| |
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|
| T |
43453081 |
ctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaa |
43453034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 43454640 - 43454318
Alignment:
| Q |
8 |
caaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcnnnnnnnngggaatagaaatgaaacaaaacgta |
107 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| ||||||||||||||| | | |
|
|
| T |
43454640 |
caaatatctctcgatccaattctattaccaaagaacataatcaaaatcctctattattatatgaaacaaaaaaa-gggaaaagaaatgaaacaaaaagaa |
43454542 |
T |
|
| Q |
108 |
aagatcatgaagataacttaccaccatcaaagggaggtgctccacataagagaaagtatatgatcacacctgcactccacacatcagcttctggcccata |
207 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43454541 |
aagatcgtgaagatatcttaccaccataaaagggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccata |
43454442 |
T |
|
| Q |
208 |
acactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaaagaagattgttagtcacaaagactatat |
307 |
Q |
| |
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||||||| ||||||||||||||| | |||||||| |||||| || ||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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|
| T |
43454441 |
acactcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagtaacaaagactatat |
43454342 |
T |
|
| Q |
308 |
atgatcattacagtaccaatagtaggt |
334 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
43454341 |
atgatcattac---accaatagtaggt |
43454318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 387 - 829
Target Start/End: Original strand, 24420746 - 24421188
Alignment:
| Q |
387 |
acctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatattcatgtccatcaacaaaaagaaaattttcaggcttaagatcacga |
486 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| || ||||| ||||| | || | ||| || || ||||||||||||||| || ||||||||||| ||| |
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|
| T |
24420746 |
acctggtttgaaaaaacaagataatccaaagtcgattgccttaaggggagattcttcctgctgattaacaaaaagaaaattctccggcttaagatcgcga |
24420845 |
T |
|
| Q |
487 |
tgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcc |
586 |
Q |
| |
|
||||| || ||| | || ||||| | || || ||||| ||||||||| ||||||||||| || |||||| ||| | || | ||||||| |||||||| |
|
|
| T |
24420846 |
tgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgccgcctttctttctgtataatgccctctttccacaatcc |
24420945 |
T |
|
| Q |
587 |
tatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttggactcccaac |
686 |
Q |
| |
|
||||||| | ||||| ||| ||| || ||||| |||| || |||| || ||| ||| ||| || || | || || | |||||||| | ||| ||| | |
|
|
| T |
24420946 |
tatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaagcttccttaatcgaaatcacattcgaactgccagc |
24421045 |
T |
|
| Q |
687 |
caagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcataccttttcccg |
786 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||| || ||||| || || ||||| ||| ||| |||| ||||||||||||| |||||| |
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| T |
24421046 |
caagtgatgcataatctgaatctctctcctcacatcttccacatcctcttcagtcaacaacttcctcttcatgattgacttgcatgcatactctttccca |
24421145 |
T |
|
| Q |
787 |
gttgatttctccaaacaaagtgaagtagttccgaattcccctt |
829 |
Q |
| |
|
|| |||||||||| |||||| | |||||||| |||| ||||| |
|
|
| T |
24421146 |
gtagatttctccacacaaaggaatgtagttccaaattgccctt |
24421188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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