View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4404-Insertion-2 (Length: 858)
Name: NF4404-Insertion-2
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-2 |
 | |
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| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 803; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 10 - 856
Target Start/End: Complemental strand, 37961160 - 37960314
Alignment:
| Q |
10 |
tcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37961160 |
tcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttca |
37961061 |
T |
|
| Q |
110 |
ccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctctcgaatactctctgcctcttgatcttccttcacat |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
37961060 |
ccatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctcttgaatactctccgcctcttgatcttccttcacat |
37960961 |
T |
|
| Q |
210 |
gaaagagatagagttaaagatccaaatggtcttaaacttgtatacttgcaagaattagaagattctgaatcaaatgaaatggaatttgcgggtttggttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37960960 |
gaaagagatagagttaaagatccaaatggtcttaaacttgtatacttgcaagaattagaagattctgaatcaaatgaaatggaatttgcgggtttggttc |
37960861 |
T |
|
| Q |
310 |
gagattcttatgttaacaagataagaacaactttagtgttgagctatgaacaagtccagaagttaaagaaatgggttactgataaatgtaaagagagttg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960860 |
gagattcttatgttaacaagataagaacagctttagtgttgagctatgaacaagtccagaagttaaagaaatgggttactgataaatgtaaagagagttg |
37960761 |
T |
|
| Q |
410 |
tagaatacaacacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtggtgaaggtgat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37960760 |
tagaatacaacacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtgatgaaggtgat |
37960661 |
T |
|
| Q |
510 |
tgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960660 |
tgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttg |
37960561 |
T |
|
| Q |
610 |
catcttatgctgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagag |
709 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
37960560 |
catcttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagag |
37960461 |
T |
|
| Q |
710 |
tcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggct |
809 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37960460 |
tcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggct |
37960361 |
T |
|
| Q |
810 |
gtttatgatacagattttgggtgggggaagcctaagaaatctgatgc |
856 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960360 |
gtttatgagacagattttgggtgggggaagcctaagaaatctgatgc |
37960314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 12 - 858
Target Start/End: Original strand, 37906910 - 37907730
Alignment:
| Q |
12 |
atccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatc--acttca |
109 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
37906910 |
atccctataatgtctattccagtcactgttcttccaaactccgggttctctatttgcctcagttacaaccatgttgctgcatacggaaaatcgtacttca |
37907009 |
T |
|
| Q |
110 |
ccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctctcgaatactctctgcctcttgatcttccttcacat |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
37907010 |
tcatttcatgaaattttgggcttctctttcaaaagccatagcaaaaaataacaataatttgtct---ga------------tcttgatcttccttcccat |
37907094 |
T |
|
| Q |
210 |
gaaagagatag---agttaaagatccaaatggtcttaaacttgtatacttgcaagaattagaagattctgaatcaaatgaaatggaatttgcgggtttgg |
306 |
Q |
| |
|
||||| |||| | ||||||||||||| | || |||||| | |||||||||||| || |||||| || || ||| | |||||||| | || | | |
|
|
| T |
37907095 |
gaaaggcatagattacttaaagatccaaaggctcctaaactcgcctacttgcaagaaatacaagattatgtattaaaaaacatggaattcacaagtctcg |
37907194 |
T |
|
| Q |
307 |
ttcgagat---tcttatgttaacaagataagaacaactttagtgttgagctatgaacaagtccagaagttaaagaaatgggttactgataaatgtaaaga |
403 |
Q |
| |
|
|||||||| |||| | ||||||| || |||| | |||||| ||||| |||| |||| ||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
37907195 |
ttcgagatggagcttacgctaacaaggtacgaactagtttagtattgagtcgtgaagaagttcagaaactaaagaaatgggttgttgataaaagtaaaga |
37907294 |
T |
|
| Q |
404 |
gagttgtagaatacaacacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtggtgaa |
503 |
Q |
| |
|
| || | || | ||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||| | ||||||| |
|
|
| T |
37907295 |
-aattaaacaacgccgcacatgtcaacatttgttgtaacatgttccttgatttggttttgtatggtaaaatcagag------caaagcaaaa-------- |
37907379 |
T |
|
| Q |
504 |
ggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaatt |
603 |
Q |
| |
|
||||||| |||| | |||||||| |||||| |||| |||||||||||||||| | |||||| |||||| | ||| ||||||||||||||| |
|
|
| T |
37907380 |
-gtgattgcgttggtgatgatgatctagtctacttcatgttctttgcagattgtcgtgaccgttctgaattttcattagctaaatcttattttggaaatt |
37907478 |
T |
|
| Q |
604 |
gtcttgcatcttatgctgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattt |
703 |
Q |
| |
|
|| |||| |||||| |||| |||||| || | ||||||| ||| |||| |||| |||||| || ||| || |||| |||||||||||||| |||| |
|
|
| T |
37907479 |
gtgttgcctcttataacgtggttgtaaaaaggggtgagttagttgaaaaagatggtattgtt---gcagcaaatgctatttaaaagaagataagagattt |
37907575 |
T |
|
| Q |
704 |
taagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaa |
803 |
Q |
| |
|
||||||| |||||||||||| ||||||||| ||||| ||||||||| |||| | | |||||||||||| || || ||||||||||| ||||| ||| |
|
|
| T |
37907576 |
taagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcatttgtagtggttgctgggtcacctaaa |
37907675 |
T |
|
| Q |
804 |
ttggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcag |
858 |
Q |
| |
|
| | ||||| ||| || |||||||||||||| || || |||||||||||||||| |
|
|
| T |
37907676 |
cttgatgtttgtgagactgattttgggtggggaaaaccaaagaaatctgatgcag |
37907730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 541 - 855
Target Start/End: Original strand, 37915566 - 37915880
Alignment:
| Q |
541 |
tgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatgctgtggctgtaaagagagatga |
640 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| |||||| | ||||||||||||||||| |||||||| |||||| |||| | |||||| || | ||| |
|
|
| T |
37915566 |
tgttttttgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtga |
37915665 |
T |
|
| Q |
641 |
gttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatg |
740 |
Q |
| |
|
|||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| |||||| |
|
|
| T |
37915666 |
gttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttgatg |
37915765 |
T |
|
| Q |
741 |
tctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagc |
840 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| || | |
|
|
| T |
37915766 |
cctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaaaac |
37915865 |
T |
|
| Q |
841 |
ctaagaaatctgatg |
855 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
37915866 |
caaagaaatccgatg |
37915880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 748 - 858
Target Start/End: Complemental strand, 37954613 - 37954503
Alignment:
| Q |
748 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
847 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
|
| Q |
848 |
atctgatgcag |
858 |
Q |
| |
|
||||||||||| |
|
|
| T |
37954513 |
atctgatgcag |
37954503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 37915145 - 37915281
Alignment:
| Q |
84 |
gttgctgcagacggaaaatcacttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctctcgaatact |
183 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||| | | |||| ||||| ||| |||| |||||| | |||||||| ||||||| |
|
|
| T |
37915145 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgag---ttgtctcttgaatact |
37915241 |
T |
|
| Q |
184 |
ctctgcctcttgatcttccttcacatgaaagagatagagt |
223 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37915242 |
ctccgcctcttgatcttccttcccatgaaagagatagagt |
37915281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 37915477 - 37915525
Alignment:
| Q |
419 |
acacttgtcaacttttgttgtaacaagttccttgatttggttttgtatg |
467 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37915477 |
acacatgtcaacttttgttgtaacatgttccttgatttggttttgtatg |
37915525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 423 - 858
Target Start/End: Original strand, 3783596 - 3784028
Alignment:
| Q |
423 |
ttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtggtgaaggtgattgtgttgatcttg |
522 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || | || ||| || || ||| || ||| ||| || |
|
|
| T |
3783596 |
ttgtcaacttttgttgtaacatgttccttgatttggttttgtttgataaaatcagagaag---caaagaaaaggttgt---tgtgtttttgtggatggtg |
3783689 |
T |
|
| Q |
523 |
atgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatgctgt |
622 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||||| | | ||| |
|
|
| T |
3783690 |
atgatctatgctacttggtatttcatgcagattgtcgtgatagtcctgaaatttcattacccaaaaattattttggaaattgtcttgccagtaaaattgt |
3783789 |
T |
|
| Q |
623 |
ggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagag---tcatgctttg |
719 |
Q |
| |
|
|| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| ||||| | |||||||| |
|
|
| T |
3783790 |
ggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgctttg |
3783889 |
T |
|
| Q |
720 |
ttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgata |
819 |
Q |
| |
|
||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | ||||||||| | |
|
|
| T |
3783890 |
ttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatgaga |
3783989 |
T |
|
| Q |
820 |
cagattttgggtgggggaagcctaagaaatctgatgcag |
858 |
Q |
| |
|
| || || ||||||||||||||||| ||||||||||||| |
|
|
| T |
3783990 |
ctgacttcgggtgggggaagcctaaaaaatctgatgcag |
3784028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 3783338 - 3783405
Alignment:
| Q |
171 |
tctctcgaatactctctgcctcttgatctt---ccttcacatgaaagagatagagttaaagatccaaa |
235 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3783338 |
tctctagaacactctctgcctcttgatcttcttccttcacatgaaagagatagagttagagacccaaa |
3783405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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