View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4404-Insertion-3 (Length: 601)
Name: NF4404-Insertion-3
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-3 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] scaffold1964 (2 HSPs) |
| | |
|
| [»] chr4 (6 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 194 - 601
Target Start/End: Original strand, 47747121 - 47747539
Alignment:
| Q |
194 |
cttatactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagc---------tgttgctagtgttgttccaactgctgtccagcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47747121 |
cttatactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgttccagctgttgctagtgttgttccaactgctgtccagcc |
47747220 |
T |
|
| Q |
285 |
gcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggcgtaggcatttgcattcgtgac |
384 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47747221 |
gcggtggcagcctcccgagcatggccatatgaaatgcaacgttgatgtggcgttttccagtcaacgtaacaaaagaggcgtaggcatttgcattcgtgac |
47747320 |
T |
|
| Q |
385 |
taagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccat--gattcaatggg |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47747321 |
taagatggagtctttgttttggctagaacagtcacctttgttggtgtatacccgattgacataggtgaagctttaggcctttaccatgcgattcaatggg |
47747420 |
T |
|
| Q |
483 |
cgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47747421 |
cgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaa |
47747520 |
T |
|
| Q |
583 |
catcatcacagcttcccgg |
601 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
47747521 |
catcatcacatattcccgg |
47747539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 400 - 601
Target Start/End: Original strand, 47726030 - 47726233
Alignment:
| Q |
400 |
gttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatg--attcaatgggcgagtgatatgcact |
497 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47726030 |
gttttggctagaacagtcacctttgttggtgtatacccgattgacataggtgaagctttaggcctttaccatgcgattcaatgggcgagtgatatgcact |
47726129 |
T |
|
| Q |
498 |
tagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagcttc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
47726130 |
tagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattc |
47726229 |
T |
|
| Q |
598 |
ccgg |
601 |
Q |
| |
|
|||| |
|
|
| T |
47726230 |
ccgg |
47726233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 198 - 520
Target Start/End: Original strand, 6949524 - 6949836
Alignment:
| Q |
198 |
tactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgttgctagtgttgttccaactgctgtccagccgcagtggcagcct |
297 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
6949524 |
tactgatatctctgccgtaatagctgttgttcctgctgtcttccaaccagcagctgtt------------ccagctgctgtccagccgcggtggcagcct |
6949611 |
T |
|
| Q |
298 |
cccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggcgtaggcatttgcattcgtgactaagatggagtct |
397 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||| || |||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
6949612 |
cccgagcatggcagtatgaaacgcaacgttgatgcggagttctccagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaagatggagtct |
6949711 |
T |
|
| Q |
398 |
ttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccat--gattcaatgggcgagtgatatgca |
495 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || |||||| |||||||| |||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
6949712 |
ttgttttggctagaacaatcacctttattggtgtatatcctgttgacaaaggtgaagttttaggcctttaccatgcgcttcaatgggcgagtgatatgca |
6949811 |
T |
|
| Q |
496 |
cttagataattttgattttgaagtc |
520 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
6949812 |
cttagataatattgattttgaagtc |
6949836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 47746933 - 47747048
Alignment:
| Q |
7 |
acgaaaaatattcacgaggaagnnnnnnn-ctaaatgacaattacaaaaatgaataccttagtctataaatctaaatatcgatgaatacaagttaggcta |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47746933 |
acgaaaaatattcacgaggaagaaaaaaaactaaatgacaattacaaaaatgaataccttagtctataaatctaaatatcgatgaatacaagttaggcta |
47747032 |
T |
|
| Q |
106 |
aattatatcgaagatc |
121 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47747033 |
aattatatcgaagatc |
47747048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 16678952 - 16678909
Alignment:
| Q |
559 |
ggaagacataa-ctgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
16678952 |
ggaagacataaactgaatttggcaacatcatcacggcttcccgg |
16678909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 259 - 591
Target Start/End: Original strand, 10600725 - 10601059
Alignment:
| Q |
259 |
agtgttgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaa |
358 |
Q |
| |
|
|||| ||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10600725 |
agtgatgttccagctgctgcccagccgcggtggcagcctcccgagcatggccgtatgaaatgcaacgttgatgcggcgttctccagtcaacatatcaaaa |
10600824 |
T |
|
| Q |
359 |
gaggcgtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagcttt |
458 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
10600825 |
caggcgtaggcatttgcattcgtgacgaagatggagtctttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagcttt |
10600924 |
T |
|
| Q |
459 |
aggcctttaccat--gattcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagt |
556 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||| || |
|
|
| T |
10600925 |
aggcctttaccatgcgcttcaatgggcgagtgatatgcacttagataatattgattttgaagttgactccaaaaccacaaaagacactctttgctcaggt |
10601024 |
T |
|
| Q |
557 |
cgggaagacataactgaatttggcaacatcatcac |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601025 |
cgggaagacataactgaatttggcaacatcatcac |
10601059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 279 - 601
Target Start/End: Complemental strand, 20526661 - 20526337
Alignment:
| Q |
279 |
ccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggcgtaggcatttgcatt |
378 |
Q |
| |
|
||||| || |||||||||| | |||| |||||| ||||| |||||| ||| || ||||||||| ||||| | |||||||| | | ||||||||||| |
|
|
| T |
20526661 |
ccagctgcggtggcagccttctgagcatggccacatgaagtgcaacattggtgcggcgttctctagtcaccgtaacaaaaccaacatcggcatttgcatc |
20526562 |
T |
|
| Q |
379 |
cgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatgatt--c |
476 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||||||| ||| |||| |||||| || ||| |||| || || ||||| || || ||| ||| || | | |
|
|
| T |
20526561 |
catgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctcc |
20526462 |
T |
|
| Q |
477 |
aatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatt |
576 |
Q |
| |
|
|||||| || |||||||||| | |||||| | |||||||||||| |||| |||| ||||||||| ||| |||||||| |||||||||||||||||||| | |
|
|
| T |
20526461 |
aatgggtgaatgatatgcaccttgataatatggattttgaagtctactctaaaatcacaaaagatgctatttactcgggtcgggaagacataactgaagt |
20526362 |
T |
|
| Q |
577 |
tggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|| ||||| |||| ||||||||| |
|
|
| T |
20526361 |
cggtaacattatcattgcttcccgg |
20526337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 198 - 598
Target Start/End: Complemental strand, 2973994 - 2973587
Alignment:
| Q |
198 |
tactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgtt---------gctagtgttgttccaactgctgtccagccgcag |
288 |
Q |
| |
|
|||||| ||| ||| ||||| |||||||||||||| ||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||| | |
|
|
| T |
2973994 |
tactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagcagctgttccagctgctgctagtgctgttccagctgctgtccagccgcgg |
2973895 |
T |
|
| Q |
289 |
tggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggcgtaggcatttgcattcgtgactaag |
388 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
2973894 |
tggcagcctcccgagcatggccgtatgaattgcaacgttgatgcggcgttctccagtcaacgcaacaaaacaggcgtaggcatttgcatccgtgacgaag |
2973795 |
T |
|
| Q |
389 |
atggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccat--gattcaatgggcgag |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| | |||||| |||||| |
|
|
| T |
2973794 |
atggagtctttgttttggctagaacagtcacct---ttggtgtatatccggttgacataggtgaagctttaggcatttaccatgcgcttcaat-ggcgag |
2973699 |
T |
|
| Q |
487 |
tgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatc |
586 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2973698 |
tgatatggacttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatc |
2973599 |
T |
|
| Q |
587 |
atcacagcttcc |
598 |
Q |
| |
|
||||| |||||| |
|
|
| T |
2973598 |
atcacggcttcc |
2973587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 289 - 601
Target Start/End: Original strand, 14230684 - 14230998
Alignment:
| Q |
289 |
tggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggcgtaggcatttgcattcgtgactaag |
388 |
Q |
| |
|
|||||||||||||||| ||| | |||||| || |||||||||| |||||| || ||||| | |||||||| || | || |||||||| |||||| ||| |
|
|
| T |
14230684 |
tggcagcctcccgagcatggtcgtatgaagtgtaacgttgatgcggcgttttctagtcaccgtaacaaaacgggaattggtatttgcatccgtgacgaag |
14230783 |
T |
|
| Q |
389 |
atggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatga--ttcaatgggcgag |
486 |
Q |
| |
|
||||| ||||| |||||||||||| | | |||||||||||| || ||| ||||||| || |||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
14230784 |
ggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttgggcctttaccatgcgcttcaatggacgag |
14230883 |
T |
|
| Q |
487 |
tgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatc |
586 |
Q |
| |
|
||||||||| | | || ||||| ||||||||||||| |||||||||||||| | |||||| ||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
14230884 |
cgatatgcaccttgttatcattgatattgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacataaccgaatttggaaacatc |
14230983 |
T |
|
| Q |
587 |
atcacagcttcccgg |
601 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
14230984 |
atcacagcctcccgg |
14230998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 264 - 593
Target Start/End: Original strand, 17826379 - 17826714
Alignment:
| Q |
264 |
tgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggc |
363 |
Q |
| |
|
||||||| |||||| ||||| || |||| ||||||| |||| ||||| || || | ||||||||||| || |||||| ||||| | |||||||| ||| |
|
|
| T |
17826379 |
tgttccagctgctgcccagcagcggtggaagcctcctgagcatggccgcataaagtacaacgttgatgcggtgttctctagtcaccgtaacaaaacgggc |
17826478 |
T |
|
| Q |
364 |
gtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttatt----ggtgtatacccgattgacataggtgaagcttta |
459 |
Q |
| |
|
| || |||||||| || ||| |||| ||||| ||||| |||||||||||||| | ||||||| ||||| || ||| ||||||| || |||||||| |
|
|
| T |
17826479 |
attggtatttgcatccgcgacgaagagggagtatttgtgttggctagaacagttagctttatttcttggtgtctatccggttgacattggggaagctttg |
17826578 |
T |
|
| Q |
460 |
ggcctttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtc |
557 |
Q |
| |
|
|||||||||||| |||||||| | || ||||||||| | |||||| ||||||||||||||||||| |||| ||||||||| |||||||| ||| ||| |
|
|
| T |
17826579 |
agcctttaccatgcgcttcaatggacaagcgatatgcaccttgataatattgattttgaagtcgactctaaaatcacaaaagatgctctttattcgtgtc |
17826678 |
T |
|
| Q |
558 |
gggaagacataactgaatttggcaacatcatcacag |
593 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
17826679 |
gggaagatataaccgaatttggtaacatcatcacag |
17826714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 369 - 601
Target Start/End: Complemental strand, 10973947 - 10973713
Alignment:
| Q |
369 |
catttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttac |
468 |
Q |
| |
|
||||||||| ||||| ||| ||| |||||||||||||| |||||| | | ||||||||||| || ||||||||||| | |||||||| || |||||| |
|
|
| T |
10973947 |
catttgcatccgtgaagaaggtggggtctttgttttggccagaacaataagttttattggtgtttatccgattgacattgaggaagctttgggtctttac |
10973848 |
T |
|
| Q |
469 |
catga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagaca |
566 |
Q |
| |
|
|||| |||||||||| |||||||||||| | |||||| ||||||||||||||||||| ||||||| |||||| ||||| || ||| ||| |||||||| |
|
|
| T |
10973847 |
catgcgcttcaatgggctagtgatatgcaccttgataatattgattttgaagtcgactctaaaaccataaaagatgctctatattcgggtcaggaagaca |
10973748 |
T |
|
| Q |
567 |
taactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
10973747 |
taacagaatttggtaacatcatcacggcttcccgg |
10973713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 2974087 - 2974030
Alignment:
| Q |
198 |
tactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgtt |
255 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2974087 |
tactgatatctctgccgtaacagctgctgttcctgctgtcttccaaccagccgctgtt |
2974030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1964 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold1964
Description:
Target: scaffold1964; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 248 - 596
Target Start/End: Original strand, 733 - 1082
Alignment:
| Q |
248 |
cagctgttgctagtgttgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtca |
347 |
Q |
| |
|
|||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
733 |
cagctgctgctggtgctgttccagctgctgtccagccgcggtggcagcctcccaaggatggccgtatgaaatgcaacgttgatgcggcgttctccagtca |
832 |
T |
|
| Q |
348 |
acataacaaaagaggcgtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacata |
447 |
Q |
| |
|
| |||||||| |||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||| |
|
|
| T |
833 |
aggtaacaaaacaggcgttggcattttcattcttgacgaagatggagtctttgttttggctagaacagtcacc-ttattgatgtatatccggttgacata |
931 |
T |
|
| Q |
448 |
ggtgaagctttaggcctttaccat--gattcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctc |
545 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
932 |
ggtgaagctttaagcctttaccatgcgcttcaatcggcgagtgatatgcacttagataatattgattttgaagtcgactccaaaaccacaaaagacgctc |
1031 |
T |
|
| Q |
546 |
tttactcgagtcgggaagacataactgaatttggcaacatcatcacagctt |
596 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
1032 |
tttactcgggtcgggaagacataactgaatttggcaacattatcacggctt |
1082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1964; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 654 - 710
Alignment:
| Q |
199 |
actgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgtt |
255 |
Q |
| |
|
||||| ||| |||||||||||| || | ||||||||||| |||||||||||| |||| |
|
|
| T |
654 |
actgatatctctgccgtaatagttgttattcctgctgtaatccaaccagcagttgtt |
710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 259 - 601
Target Start/End: Original strand, 12354856 - 12355199
Alignment:
| Q |
259 |
agtgttgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaa |
358 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||||||||||| |||| ||||| |||||| || |||||||| | |||||| || ||||| | ||| |||| |
|
|
| T |
12354856 |
agtgatgttccagctgctgtccagcagcgatggcagcctcc-gagcatggccgtatgaagtgtaacgttgacgcggcgttttctagtcaccgtaataaaa |
12354954 |
T |
|
| Q |
359 |
gaggcgtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagcttt |
458 |
Q |
| |
|
|| | || |||||||| |||||| ||| ||||| ||||| |||||||||||| | | |||||||||||| || ||| ||||||| || |||||||| |
|
|
| T |
12354955 |
cgggaattggtatttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagcttt |
12355054 |
T |
|
| Q |
459 |
aggcctttaccatg--attcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagt |
556 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||||| | |||||| ||| || |
|
|
| T |
12355055 |
gggcctttaccatgcgattcaatgggcgagcgatatgcaccttgataacattgattttgaagtcgactctaaaaccacaaaagatggtctttattcgggt |
12355154 |
T |
|
| Q |
557 |
cgggaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
12355155 |
cgggaagacataacggaatttggaaatatcatcacagcttcccgg |
12355199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 451 - 601
Target Start/End: Complemental strand, 54028019 - 54027867
Alignment:
| Q |
451 |
gaagctttaggcctttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctcttt |
548 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||||||| | |||||| |||||| ||| || ||||| |||||||||||||||||||||| |
|
|
| T |
54028019 |
gaagctctaggcctttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattgtgaggttgactctaaaaccacaaaagacgctcttt |
54027920 |
T |
|
| Q |
549 |
actcgagtcgggaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
54027919 |
gttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccgg |
54027867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 397 - 601
Target Start/End: Complemental strand, 27067105 - 27066899
Alignment:
| Q |
397 |
tttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatga--ttcaatgggcgagtgatatgc |
494 |
Q |
| |
|
||||| |||| ||||||| | | |||||||||||| || || ||||||| || |||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
27067105 |
tttgtgttggatagaacaattagctttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgc |
27067006 |
T |
|
| Q |
495 |
acttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagc |
594 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||||||||| |||||| | |||| ||| ||||||||||||||| |||||||| |||||||||||| | |
|
|
| T |
27067005 |
accttgataacattgattttgaagtcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataatggaatttggaaacatcatcacaac |
27066906 |
T |
|
| Q |
595 |
ttcccgg |
601 |
Q |
| |
|
|| |||| |
|
|
| T |
27066905 |
tttccgg |
27066899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 397 - 601
Target Start/End: Complemental strand, 27087818 - 27087612
Alignment:
| Q |
397 |
tttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatga--ttcaatgggcgagtgatatgc |
494 |
Q |
| |
|
||||| |||| ||||||| | | |||||||||||| || || ||||||| || |||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
27087818 |
tttgtgttggatagaacaattagctttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgc |
27087719 |
T |
|
| Q |
495 |
acttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagc |
594 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||||||||| |||||| | |||| ||| ||||||||||||||| |||||||| |||||||||||| | |
|
|
| T |
27087718 |
accttgataacattgattttgaagtcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataatggaatttggaaacatcatcacaac |
27087619 |
T |
|
| Q |
595 |
ttcccgg |
601 |
Q |
| |
|
|| |||| |
|
|
| T |
27087618 |
tttccgg |
27087612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 27066579 - 27066511
Alignment:
| Q |
533 |
acaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
27066579 |
acaaaagacggtctttattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccgg |
27066511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 27066773 - 27066705
Alignment:
| Q |
533 |
acaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||| ||| |||| |
|
|
| T |
27066773 |
acaaaagacggtctttattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccgg |
27066705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 264 - 601
Target Start/End: Complemental strand, 29755459 - 29755118
Alignment:
| Q |
264 |
tgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggc |
363 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||| ||||| |||||| || ||||||| | |||||| || ||||| | ||| |||| | |
|
|
| T |
29755459 |
tgttccaactgctgtccagcagcgatagcagcctcccgagcatggccgtatgaagtgttacgttgacgcggcgttttctagtcaccgtaataaaacggaa |
29755360 |
T |
|
| Q |
364 |
gta--ggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttagg |
461 |
Q |
| |
|
|| || |||||||| |||||| ||| ||||| ||||| |||||||||||| | | |||||||||||| || ||| ||||||| || |||||||| | |
|
|
| T |
29755359 |
atattggtatttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttgga |
29755260 |
T |
|
| Q |
462 |
cctttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgg |
559 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||| |||||| ||| || || |
|
|
| T |
29755259 |
cctttaccatgcgcttcaatgggtgagcgatatgcactttgataacattgattttgaagtcgactctaaaaccacaaaaaacggtctttattcgggttgg |
29755160 |
T |
|
| Q |
560 |
gaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
29755159 |
gaagacataacggaatttggaaacatcatcatagcttcccgg |
29755118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 420 - 599
Target Start/End: Complemental strand, 5335557 - 5335376
Alignment:
| Q |
420 |
ctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaa |
517 |
Q |
| |
|
|||||||||||| || ||| ||||||| || |||||||| | ||||||||||| ||||||||||||| |||||||| | ||||| || |||||||| |
|
|
| T |
5335557 |
ctttattggtgtctatccggttgacattggggaagctttggacctttaccatgcgcttcaatgggcgagcgatatgcatcttgataacattaattttgaa |
5335458 |
T |
|
| Q |
518 |
gtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacagcttccc |
599 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5335457 |
gtcgactctaaaaccacaaaagacggtctttattcgggtcgggaagacataactgaatttggaaacatcatcacagcttccc |
5335376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 568
Target Start/End: Original strand, 26683235 - 26683415
Alignment:
| Q |
390 |
tggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcctttaccatg--attcaatgggcgagt |
487 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||||||| || |||||||||| ||||| | || |||||||||| | ||||||| |||| |
|
|
| T |
26683235 |
tggagtctttgttttggctagaacaatcagttttaatggtgtatatcctgttgacataggggaagcatctggtctttaccatgctctccaatgggtgagt |
26683334 |
T |
|
| Q |
488 |
gatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacata |
568 |
Q |
| |
|
||||||||| | |||||| | |||||||||| |||| ||| |||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
26683335 |
gatatgcaccttgataatatgaattttgaagtttactcttaaattacaaaagatgctctttactcgggtctggaagacata |
26683415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 264 - 601
Target Start/End: Complemental strand, 30141442 - 30141103
Alignment:
| Q |
264 |
tgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggc |
363 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||||| ||| | |||||| || |||||||| | ||| || || ||||| | ||| |||| ||| |
|
|
| T |
30141442 |
tgttccagctgctgtccagcaccgatggcagccccccgagcatggtcgtatgaagtgtaacgttgacgcggcattttctagtcaccgtaataaaacagga |
30141343 |
T |
|
| Q |
364 |
gtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcc |
463 |
Q |
| |
|
| || |||||||| |||||| ||| |||| || || |||||||||||| | | ||||||||||| || ||| ||||||| || |||||||| |||| |
|
|
| T |
30141342 |
attggtatttgcatccgtgacgaagggagagttttcgtgttggctagaacaattagttttattggtgtctatccggttgacattggggaagctttgggcc |
30141243 |
T |
|
| Q |
464 |
tttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcggga |
561 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| | ||||| |||||||| |||||||||| |||||||||||||| | |||||| ||| ||||||| |
|
|
| T |
30141242 |
tttaccatgcgcttcaatgggcgagcgatatgcaccttgataacattgattttaaagtcgactctaaaaccacaaaagatggtctttattcgggtcggga |
30141143 |
T |
|
| Q |
562 |
agacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
30141142 |
agacataacggaatgtggaaacatcatcacagcttcccgg |
30141103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 264 - 600
Target Start/End: Complemental strand, 12371289 - 12370951
Alignment:
| Q |
264 |
tgttccaactgctgtccagccgcagtggcagcctcccgagcttggccatatgaaatgcaacgttgatgtggcgttctccagtcaacataacaaaagaggc |
363 |
Q |
| |
|
||||||| |||||| ||||| || ||||||||||||||||| ||||| |||| |||||| |||| | ||||||||||||||| ||||| || ||| |
|
|
| T |
12371289 |
tgttccagctgctgcccagctgcggtggcagcctcccgagcatggccgcatgaggtgcaacattgaggcggcgttctccagtcacagtaacagaaccggc |
12371190 |
T |
|
| Q |
364 |
gtaggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttattggtgtatacccgattgacataggtgaagctttaggcc |
463 |
Q |
| |
|
| ||||||||||| ||||| ||| ||| ||||||||||||||||||||| ||| |||| ||||||||| || ||||||||| ||||| || || | |
|
|
| T |
12371189 |
atcggcatttgcatccgtgatgaaggtggggtctttgttttggctagaacaatcagttttaatggtgtatatcctgttgacatagaggaagcattgggtc |
12371090 |
T |
|
| Q |
464 |
tttaccatgatt--caatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcggga |
561 |
Q |
| |
|
||||||||| | |||| || ||||||||||||| | |||||| | ||||||||||| ||||| |||| |||||| | |||||||||||| ||||||| |
|
|
| T |
12371089 |
tttaccatgctctccaataggtgagtgatatgcaccttgataatatggattttgaagttgactctaaaattacaaaaaatgctctttactcgggtcggga |
12370990 |
T |
|
| Q |
562 |
agacataactgaatttggcaacatcatcacagcttcccg |
600 |
Q |
| |
|
||||||||||||| | || ||||| ||||| | |||||| |
|
|
| T |
12370989 |
agacataactgaagtcggtaacattatcactgtttcccg |
12370951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 601
Target Start/End: Original strand, 870 - 1023
Alignment:
| Q |
451 |
gaagctttaggcctttaccatga--ttcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctcttt |
548 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||| ||||||||| | |||||| ||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
870 |
gaagctttgggactttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattttgaagtcgactctaaaaccacaaaagacgttcttt |
969 |
T |
|
| Q |
549 |
actcgagtcgg-gaagacataactgaatttggcaacatcatcacagcttcccgg |
601 |
Q |
| |
|
| ||| ||||| |||| || || |||||||| |||||||||||||| |||||| |
|
|
| T |
970 |
attcgggtcggaaaagatattaccgaatttggaaacatcatcacagcctcccgg |
1023 |
T |
|
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