View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404-Insertion-4 (Length: 555)
Name: NF4404-Insertion-4
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 21016632 - 21016235
Alignment:
| Q |
7 |
ataaactcgttctatgtcgggttggatcatctgattgaatggatcgcacaaacatttgaataatcatacatggacatgaatatggaaatatcaaaatttg |
106 |
Q |
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| T |
21016632 |
ataaactcgttctgtgtcgggttggatcatctgattgaatggatagcacaaacatttgaataatcatacatggacatgaatatggaaatatcaaaatttg |
21016533 |
T |
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| Q |
107 |
attctttattaacaccatcttatnnnnnnnnnncagagtaatatccataattgtttgatcgggagatgagtaaagtttaaccaataattatttc------ |
200 |
Q |
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| T |
21016532 |
attccttattaacaccatcttataaaaaaat---agagtaatactcataattgtttaatcaggagataagtaaaatttaaccaatgactatttctttgaa |
21016436 |
T |
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| Q |
201 |
-------tttgagttcttacaaacgattagtttttaagagagttcgttaaccacttcaattcaatgagttgatttacactttcataattttagatgagca |
293 |
Q |
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| T |
21016435 |
taatcaatttgagttcttacaaactattagtttttaagagagttcgttaaccacttcaattcaatgagttgatttacgctttcataattttaaatgagta |
21016336 |
T |
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| Q |
294 |
tcaattagcagtccataatataaatatttaaaactannnnnnnnacaagatttaaatattttctttgttcgttttctccaaccgtttctaaattctattt |
393 |
Q |
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| T |
21016335 |
tcaattagcagcccataatagaaatattttaaacaa---aaataacaagatttaaaaattttctttgttagttttctccaaccgtttctaaattctattt |
21016239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 555
Target Start/End: Complemental strand, 21016143 - 21016077
Alignment:
| Q |
489 |
gctttccaagatccacatattccttcatatgcgatcctatgaaaaaagacgcataacaagttaacaa |
555 |
Q |
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| T |
21016143 |
gctttccaagatccacatattccttcatatgcgatcctatgaaaaaagacacataacaagttaacaa |
21016077 |
T |
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